DC887897

Overview
NameDC887897
Unique NameDC887897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  212 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 547
            ND++K G +IV++AL YP + IA NAG +GSV+  K+L  D + YGY++ TG Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +       G P    G G
Sbjct:  433 NDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPKKNTG-AGGMPPGGGGMG 543          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = -1
Query:  239 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 547
            ND+++ G +IV+RAL  P + IA+NAG   S+V  K+L  D   YGYNA TG Y D++  GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  432 NDDQEAGINIVRRALQAPARQIAENAGDEASIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.320e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = -1
Query:  212 KETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 562
            + T DND++K G DI++RAL  PL+ I  N G  +G+VV EKV S +   YG+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + ++ E +  MPA  P    G G
Sbjct:  428 RATADNDDQKTGIDIIRRALEEPLRQIVANTGTTDGAVVLEKVRSGEGD-YGFNARTEEYENLVDAGVVDPTKVTRSALENAASVASILLTTEAAITDLPEDKADMPAMPPGGMGGMG 544          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.320e-20
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  245 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 547
            ND+++ G DIV+RAL  P + IA NAG +G+ +  K+L S ++ +G+NAATG YEDL+ AG+IDP KVVR  L+ A+SVA   + ++ +V E+ + E A P
Sbjct:  433 NDDQQSGIDIVRRALRAPARQIADNAGEDGAWIVGKLLESSDYNWGFNAATGEYEDLVKAGVIDPAKVVRTALQDAASVAALLITTEALVAELPKEEKAAP 533          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.320e-20
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = -1
Query:  209 IKETLD---NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 565
            +KE  D   + EE +GA+IV+ +L  PL  IA+NAG NG+V++E V S   +  G+NAATG+Y D+ AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG P     + Y
Sbjct:  424 LKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGAPGMGGDFDY 544          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = -1
Query:  239 ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 559
            + LD DE + GA IV RAL  P++ IA+NAG +GS+V +KV +  +   G+NA TG YEDL+AAG+IDP  V R  L++A+S+A   + +D VV E +E +PAMP G
Sbjct:  430 DELDGDE-RTGARIVYRALEEPIRQIAENAGADGSIVVDKVRAQGD-SIGFNALTGGYEDLVAAGVIDPAMVTRSALQNAASIAGLLVTTDVVVAEPEEEQPAMPGG 534          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_BACFO (60 kDa chaperonin OS=Bacteroides forsythus GN=groL PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  218 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 550
            +N++E  G +IVKRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YEDL  AG++DP KV R  LE+A+S+A  FL ++CVV + KE  PA P    M   G
Sbjct:  432 ENEDETTGIEIVKRAIEEPLRQIVNNAGKEGAVVVQKVKEGTG-AFGYNARTDVYEDLSEAGVVDPAKVTRIALENAASIAGMFLTTECVVADKKEEAPAPPMNPGMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            +ND++  G DIV++A+  P++ IA NAG +G+V+S  +L  DN   G+NAAT  YEDL+ AG+IDPTKVVR  L+ A+SVA   + ++  + E+  PE     G   D  G G
Sbjct:  432 ENDDQTRGIDIVRKAIVAPVRQIATNAGHDGAVISGNLLREDNESQGFNAATDTYEDLVKAGVIDPTKVVRVALQDAASVAGLLITTEAAISEV--PEDKSSGGGMPDMGGMG 542          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = -1
Query:  239 LDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 553
            ++N ++K G DIV+RA+  P + I  NAG +GSVV  K+L ++ + +GYNA TG Y D++A+GIIDP KVVR  L+ A+S++   + ++ +VVE+ +     PAMP G
Sbjct:  431 VENTDQKTGIDIVRRAIQAPARQIVANAGDDGSVVVGKILENETYTFGYNAQTGEYVDMVASGIIDPAKVVRTALQDAASISALIITTEALVVELPKKAAAAPAMPGG 538          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 1.724e-20
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  215 DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 544
            DEE  GA IV RAL  PLK IA+NAG NG+V+SE+V   +    GYNAA+  Y D++AAGI+DP KV R  L++A+S+A   L ++C+VV+  E E A PAG P  +  Y
Sbjct:  434 DEELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKE-FNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKA-PAGAPGGDFDY 541          
The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BRAJA1.011e-2042.8660 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_RHIEC1.011e-2047.1260 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH60_CHLP81.320e-2044.9260 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH602_SPHAL1.320e-2047.5260 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH602_PROMP1.320e-2044.2660 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH60_RUBXD1.724e-2049.5360 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH60_BACFO1.724e-2046.8560 kDa chaperonin OS=Bacteroides forsythus GN=groL... [more]
CH602_ERYLH1.724e-2044.2560 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]
CH602_AZOC51.724e-2044.4460 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH601_SYNY31.724e-2050.9160 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionDC887897 EIC Citrus sinensis cDNA clone EIC1072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bp
AGAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAGAATCCATAAACTCTACTAAGTCNAGTAAT
TGAATTTACAAGAAGAAGAGAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAANTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAGTATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCANCATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAGATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAAT
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