CN185428

Overview
NameCN185428
Unique NameCN185428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41
Identity = 87/122 (71.31%), Postives = 99/122 (81.15%), Query Frame = -2
Query:  220 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 585
            NPKA+PLAD+ LT  ILD+VQQA + +QLKKGANEATKTLNRGISEFI+MAAD            L EDKNVPY+FVPSK ALGRACGV+RPVI+ SVTSN+ASQLK QI Q+KD IE+LLI
Sbjct:    5 NPKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41
Identity = 87/124 (70.16%), Postives = 101/124 (81.45%), Query Frame = -2
Query:  220 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 591
            A NPKA+PLAD+ LT  ILDL+QQA++YKQLKKGANEATKTLNRGI EFIVMAAD            L EDKNVPYVFVPSK ALGRACGV+RPV++ SVT+NEA +L++QIQ +K AIE+LLI
Sbjct:    3 APNPKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_DEBHA (13 kDa ribonucleoprotein-associated protein OS=Debaryomyces hansenii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41
Identity = 89/124 (71.77%), Postives = 98/124 (79.03%), Query Frame = -2
Query:  220 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 591
            A NPKA+PLADS LT  ILD+VQQ+ N +QLKKGANEATKTLNRGISEFI+MAADT           L EDKNVPYVFVPSK ALGRACGV+RPVIA SVT+NEAS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVIAASVTTNEASAMKNQIYGIKDKIETLLI 126          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_YEAST (13 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae GN=SNU13 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.032e-40
Identity = 87/124 (70.16%), Postives = 99/124 (79.84%), Query Frame = -2
Query:  220 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 591
            A NPKA+PLAD+ LT  ILD+VQQAAN +QLKKGANEATKTLNRGISEFI+MAAD            L EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +KTQI  +KD IE LLI
Sbjct:    3 APNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLI 126          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_CRYNE (13 kDa ribonucleoprotein-associated protein OS=Cryptococcus neoformans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.317e-39
Identity = 85/122 (69.67%), Postives = 96/122 (78.69%), Query Frame = -2
Query:  220 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 585
            NPKA+PLA++ LT  ILDL+QQA +YKQLKKGANEATKTLNRGI EFIVM AD            L EDKNVPYVF+PSK ALGRACGV+RPVIA SVT+NEA +L  QIQ +K+ IEKLLI
Sbjct:    6 NPKAFPLANAQLTNQILDLIQQAQHYKQLKKGANEATKTLNRGICEFIVMTADVEPIEIVLHLPLLCEDKNVPYVFLPSKTALGRACGVSRPVIAASVTTNEARELNAQIQAVKNEIEKLLI 127          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_KLULA (13 kDa ribonucleoprotein-associated protein OS=Kluyveromyces lactis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.720e-39
Identity = 84/124 (67.74%), Postives = 99/124 (79.84%), Query Frame = -2
Query:  220 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 591
            A NPKA+PLAD+ L+  ILD+VQQA+N +QLKKGANEATKTLNRGISEFI+MAAD            L EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K+QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 126          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_CANGA (13 kDa ribonucleoprotein-associated protein OS=Candida glabrata GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.720e-39
Identity = 85/124 (68.55%), Postives = 97/124 (78.23%), Query Frame = -2
Query:  220 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 591
            A NPKA+PLAD  L+  ILD+VQQAAN +QLKKGANEATKTLNRGISEFI+MAAD            L EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADEKLSQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKNQIYAVKDKIETLLI 126          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: SNU13_ASHGO (13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.247e-39
Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = -2
Query:  220 NPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 585
            NPKA+PLAD+ LT  ILD+VQQA+N +QLKKGANEATKTLNRGISEFI+MAAD            L EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K+QI  +KD IE LLI
Sbjct:    6 NPKAFPLADAALTQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 127          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.537e-39
Identity = 78/125 (62.40%), Postives = 98/125 (78.40%), Query Frame = -2
Query:  220 EAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 594
            E VNPKA+PLAD+ LT  I++L+QQA NY QL+KGANEATKTLNRG+++ +V+A D            L EDKNVPYVFV SKQALGRACGV+RP++ACSVT+NE SQLK+QI  ++  IE+LL+
Sbjct:    3 EEVNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERLLV 127          
BLAST of CN185428 vs. ExPASy Swiss-Prot
Match: NH2L1_DICDI (NHP2-like protein 1 homolog OS=Dictyostelium discoideum GN=DDB_G0282243 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.000e-33
Identity = 71/128 (55.47%), Postives = 92/128 (71.88%), Query Frame = -2
Query:  220 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 603
            M   + N KA PLADS LT+TILDL+QQ+ N  QLKKGANE TK ++R  +EF+V+AAD            L EDKN+PYVFV SK  LGRAC V+RPV+AC+VT ++ SQLK+QI  +KD++++L I
Sbjct:    1 MADSSNNEKAKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTVDDKSQLKSQITNVKDSLDRLWI 128          
The following BLAST results are available for this feature:
BLAST of CN185428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SNU13_YARLI6.984e-4171.3113 kDa ribonucleoprotein-associated protein OS=Yar... [more]
SNU13_USTMA6.984e-4170.1613 kDa ribonucleoprotein-associated protein OS=Ust... [more]
SNU13_DEBHA6.984e-4171.7713 kDa ribonucleoprotein-associated protein OS=Deb... [more]
SNU13_YEAST2.032e-4070.1613 kDa ribonucleoprotein-associated protein OS=Sac... [more]
SNU13_CRYNE1.317e-3969.6713 kDa ribonucleoprotein-associated protein OS=Cry... [more]
SNU13_KLULA1.720e-3967.7413 kDa ribonucleoprotein-associated protein OS=Klu... [more]
SNU13_CANGA1.720e-3968.5513 kDa ribonucleoprotein-associated protein OS=Can... [more]
SNU13_ASHGO2.247e-3968.8513 kDa ribonucleoprotein-associated protein OS=Ash... [more]
NH2L1_DROME6.537e-3962.40NHP2-like protein 1 homolog OS=Drosophila melanoga... [more]
NH2L1_DICDI7.000e-3355.47NHP2-like protein 1 homolog OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185428 ID=CN185428; Name=CN185428; organism=Citrus sinensis; type=EST; length=661bp
CCCCTTTTTTTTTTGTTTGTAGCATCATTCATTCATTGCAGGTTCTGGTA
AATATGACTCTAAAAGCCTTCCCATAATGCATGACAAGAAAACATAACCT
TCAAAAATACAAAGATTAATAATAGAAGATTTCCAAGCAGCACAACTACA
CCATCAGTCAAAGCCTCTAACCACCATCAAAGAGGCCCATCACACCGAAT
ATGAATCCCATTATATTCATATCAAGAGCTTCTCAATGGCATCCTTCAGC
TGTTGAATTTGAGTCTTCAACTGACTCGCCTCATTTGAGGTCACAGAGCA
AGCAATGACAGGTCTTGTGACCCCACATGCCCTGCCAAGAGCCTGCTTTG
AAGGGACAAAAACATAGGGAACATTCTTGTCCTCTGCAAGCAGTGGAAGA
TGAAGAAGAATCTCCAGAGGCTCGGTATCAGCAGCCATCACAATAAACTC
GGAGATACCTCTGTTAAGAGTCTTAGTAGCTTCATTGGCGCCCTTTTTGA
GCTGCTTGTAATTGGCAGCTTGCTGAACGAGATCCAGTATCGTGATTGTG
AGATTAGAATCTGCTAGCGGGTAAGCTTTAGGGTTCACTGCTTCTCCTGT
CATTTTCGTGGTGGCGGGGACGGAGGCTAGGGTTTTTGTGGCAGCTAATG
AAGCGTACCCT
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