CN185372

Overview
NameCN185372
Unique NameCN185372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.110e-28
Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q+Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.110e-28
Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q+Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.110e-28
Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q+Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.062e-28
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  298 LHGLVQHYIKLSELE--KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 777
            L G+ Q YI + ELE  K   L DL D++   Q VIF  + S+   L   L   NF    IH+ + Q ER T  K F+ G+ RIL+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  233 LEGIKQFYINV-ELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTE-RDVGMMREIEQFYSTQIEEMPADI 392          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28
Identity = 65/161 (40.37%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  298 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 777
            L GL Q++I + + E K   L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  235 LEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q+Y  + E +K   LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q++R   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  240 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 404          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.928e-28
Identity = 60/163 (36.81%), Postives = 102/163 (62.58%), Query Frame = -3
Query:  292 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 777
            L G+ Q+Y+ + + + K   L DL D+L   Q VIF  +  +   L+  L + NF  + +H  M QE+R      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++S SD   + +++  + + I  +P  + T
Sbjct:  236 LEGIKQYYVNVEKEDWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITS-SDLSKMKEIEKYYRIKISPVPADLST 397          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.928e-28
Identity = 64/161 (39.75%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  298 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 777
            L GL Q++I + + + K   L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  237 LEGLKQYFIAIEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 396          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.928e-28
Identity = 65/158 (41.14%), Postives = 99/158 (62.66%), Query Frame = -3
Query:  307 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 777
            L GL Q++I + + E K   L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P
Sbjct:  235 LEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMP 391          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.928e-28
Identity = 67/166 (40.36%), Postives = 97/166 (58.43%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q+Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + S +D   L +++     +IK +P  ID   Y+
Sbjct:  239 LRGITQYYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM-SWNDRYSLYKIEQELGTEIKPIPATIDRKLYV 403          
The following BLAST results are available for this feature:
BLAST of CN185372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX6_MOUSE3.110e-2841.57Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]
DDX6_HUMAN3.110e-2841.57Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
DDX6_CHICK3.110e-2841.57Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
IF4A_PICST4.062e-2842.59ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_COCIM5.305e-2840.37ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
DHH1_CANGA5.305e-2839.16ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
FAL1_VANPO6.928e-2836.81ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
FAL1_MAGGR6.928e-2839.75ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
FAL1_AJECN6.928e-2841.14ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
DHH1_PICST6.928e-2840.36ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185372 ID=CN185372; Name=CN185372; organism=Citrus sinensis; type=EST; length=779bp
GGGGCCCCCGGCACTCTAATACAGCCAAGGTACCAGTTGAATAACATTCC
CAATAGCAGCCCTATCCAGAAGGTATTAAAAGGCTACAAATCCCAAAAAC
AAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCTGACAAATC
TCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAGAAACAAAT
ACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAAATTTTCCA
CATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGATGTATCAAT
CTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTGAACCTGAT
TGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATTGCAAGGCCC
TTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAAGTATCAGC
AGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTCAATGTCAA
TTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGTTCCCCTCC
TTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATGCCAGAATG
GATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTTTAACTCCG
CTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAAAGTCCAAT
GCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCACTCAATTT
GATGTAGTGCTGTACAAGACCATGAAGAG
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