CN185353

Overview
NameCN185353
Unique NameCN185353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADL_RAT (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadl PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 63/202 (31.19%), Postives = 115/202 (56.93%), Query Frame = 2
Query:  155 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            F+ESV +F +E + P   + +++    ++  LW+  G   L GI   ++            +  EE    S   G  +  HS++ +  +  +G+  Q ++++P++ +G+ +GA+AM+EP AGSD+ G++  A R    +I+NG+K++ TNG ++  ++V A T+ +A S   GI+ F++E GM GF   +KL K+GM+  DT
Sbjct:   60 FRESVRKFFQEEVIPYHEEWEKAGEVSRE--LWEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEE-QAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEQFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVTNREARSPAHGISLFLVENGMKGFIKGKKLHKMGMKAQDT 258          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADL_HUMAN (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADL PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 62/202 (30.69%), Postives = 116/202 (57.43%), Query Frame = 2
Query:  155 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            F++SV +F +E + P  ++ +++    ++V  W+  G   L G+   +             I  EE + ++ S G  +  HS + ++ +  HGS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T+ +A S   GI+ F++E GM GF   +KL K+G++  DT
Sbjct:   60 FRKSVRKFFQEEVIPHHSEWEKAGEVSREV--WEKAGKQGLLGVNIAEHLGGIGGDLYSAAIVWEEQAYSNCS-GPGFSIHSGIVMSYITNHGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGSLSDVVIVVAVTNHEAPSPAHGISLFLVENGMKGFIKGRKLHKMGLKAQDT 258          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADL_PIG (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADL PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.097e-25
Identity = 64/202 (31.68%), Postives = 113/202 (55.94%), Query Frame = 2
Query:  155 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            F+ESV +F +E + P  A+ +++    ++  LW+  G   L GI   +             I  EE    S   G  +  HS++ +  +  +GS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G++  A +    +I+NG+K++ TNG ++  ++V A T+ +A S   GI+ F++E GM GF   +KL K+G++  DT
Sbjct:   60 FRESVRKFFQEEVIPHHAEWEKAGEVSRE--LWEKAGKQGLLGINIAERHGGIGGDLYSAAIVWEE-QAYSNCTGPGFSLHSDIVMPYIANYGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKKDGSDWILNGSKVFITNGWLSDVVIVVAVTNREARSPAHGISLFLVENGMKGFVKGRKLHKIGLKAQDT 258          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADL_MACFA (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADL PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.220e-23
Identity = 58/202 (28.71%), Postives = 116/202 (57.43%), Query Frame = 2
Query:  155 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            F++S+ +F +E + P  ++ +++    ++V  W+  G   L G+   +             +  EE + ++ S G  +  HS + ++ +  +GS  Q   ++P++ +G+ +GA+AM+E  AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T+ +A S  +GI+ F++E GM GF   +KL K+G++  DT
Sbjct:   60 FRKSIRKFFQEEVIPHHSEWEKAGEVSREV--WEKAGKQGLLGVNIAEHLGGIGGDLYYAAVVWEEQAYSNCS-GPGFSVHSGIVMSYITNYGSEEQIKHFIPQMTAGKCIGAIAMTELGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGWLSDVVIVVAVTNHEAPSPARGISLFLVENGMKGFIKGRKLHKMGLKAQDT 258          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.458e-23
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  152 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            + + ++   A + IAP AA +DQ   FP++         FN   I  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD   G+ GI+AFI+ K   GFS   K  KLG++GS T
Sbjct:   21 ELRATIRALAEKEIAPHAADVDQRARFPEEALAALNASGFN--AIHVPEEYGGQGADSVAACIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPSLAAEGAMASYALSEREAGSDAASMRTRAKADGDDWILNGFKCWITNGGKSTWYTVMAVTDPDKGANGISAFIVHKDDEGFSIGPKEKKLGIKGSPT 218          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADM_PANTR (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.879e-22
Identity = 75/229 (32.75%), Postives = 109/229 (47.60%), Query Frame = 2
Query:   86 TKKKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            TK  +        S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K  T FI+E   PG    +K   +G R SDT
Sbjct:   25 TKANRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADM_MACFA (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.879e-22
Identity = 74/216 (34.26%), Postives = 106/216 (49.07%), Query Frame = 2
Query:  125 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    PQ            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K  T FI+E   PG    +K   +G R SDT
Sbjct:   38 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNPH---IPQNCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNEQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKASWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADM_HUMAN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.879e-22
Identity = 75/229 (32.75%), Postives = 109/229 (47.60%), Query Frame = 2
Query:   86 TKKKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            TK  +        S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K  T FI+E   PG    +K   +G R SDT
Sbjct:   25 TKANRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: GCDH_DICDI (Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.454e-22
Identity = 65/213 (30.52%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  119 STSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD-GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            S   L  + ++  ++ V +F ++ + PR     +   F +++   +  G   + G T P               A+E++     S   +    S+L ++ +   G+ AQK KYL  L SG+ VG   ++EPNAGSD  GM+ +A +   G Y++NG K W TN P+A   VV+AK +    +  I  F++EKGM G S  +   KL +R S T
Sbjct:   44 SLESLLTEEEVMIRDQVNKFCQDELMPRIQMAYRDEKFDREI--MREYGKMGMLGATIPAYGGVSHVAYGLMANAVEKVDSGYRS---AMSVQSSLVMHPINTFGTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYVLNGTKTWITNSPIADVFVVWAKVE----NGDIRGFVLEKGMKGLSAPKIEGKLSLRASIT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 65/201 (32.34%), Postives = 100/201 (49.75%), Query Frame = 2
Query:  152 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            + + ++   A + IAP AA++D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD   G+ GI+AF++ K   GF+   K  KLG++GS T
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTDPDRGANGISAFMVHKDDEGFTVGPKERKLGIKGSPT 218          
The following BLAST results are available for this feature:
BLAST of CN185353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ACADL_RAT2.371e-2531.19Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADL_HUMAN2.371e-2530.69Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADL_PIG3.097e-2531.68Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADL_MACFA2.220e-2328.71Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACDP_MYCLE6.458e-2334.33Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACADM_PANTR1.879e-2232.75Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_MACFA1.879e-2234.26Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_HUMAN1.879e-2232.75Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
GCDH_DICDI2.454e-2230.52Glutaryl-CoA dehydrogenase, mitochondrial OS=Dicty... [more]
ACDP_MYCTU3.205e-2232.34Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185353 ID=CN185353; Name=CN185353; organism=Citrus sinensis; type=EST; length=757bp
GAGGGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAGAAGAATGCAGAGGC
TCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGAAGAAGAAA
CATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGACACTCAATT
ACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACATTGCTCCTC
GTGCGGCAAAAATTGACCAATCAAATTCGTTCCCACAGGATGTTAATTTA
TGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGA
ATACGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAG
AAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCT
AATTTGTGCATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGA
CAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCA
TGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCT
GATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCAC
CAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAGACATTA
AAGCTGGCTCAAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCC
GGATTCAGCACTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGA
TACATGT
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