CN185353

Overview
NameCN185353
Unique NameCN185353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACAD8_BOVIN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACAD8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 57/210 (27.14%), Postives = 91/210 (43.33%), Query Frame = 2
Query:  125 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            S+   + Q +F++    FA   +AP  A+ DQ   FP D    +        G+    +            I  E ++    S       H N+C+  + R GS  Q+ +  P L + E   +  ++EP +GSD   +   A R    YI+NG+K + + G  A   VV  +T    G +GI+  ++EKG PG S  +K  K+G     T
Sbjct:   39 SMGLSEEQKEFQKVAFNFAAREMAPHMAEWDQKELFPVDT--MRKAAQLGFGGVYVQTDVGGAGLSRLDTSIIFEALATGCTSTTAYMSIH-NMCVWIIDRFGSEEQRHRLCPPLCTMEKFASYCLTEPGSGSDAASLMTSAVRQHDHYILNGSKAFISGGGEADIYVVMCRTG-GPGPRGISCVVVEKGTPGLSFGKKEKKVGWNSQPT 244          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: GCDH_PIG (Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.225e-15
Identity = 57/206 (27.67%), Postives = 98/206 (47.57%), Query Frame = 2
Query:  146 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD-KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            ++  +++   + +E++ PR    +++  F +++     MG   + G T                +A  E+ R       +    S+L ++ +  +GS  Q+  KYLP+L  GE +G   ++EPN GSD   M+ +A  +  +  Y +NG K W TN PVA   VV+A+ +       I  F++EKGM G S  +   K  +R S T
Sbjct:   33 EILIRDTFRTYCQEHLMPRIVLANRNEVFHREII--SEMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRALHNPSNRSYTLNGAKTWITNSPVADLFVVWARCE----DNCIRGFLLEKGMRGLSAPKIEGKFSLRASAT 231          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACAD8_HUMAN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACAD8 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.225e-15
Identity = 54/210 (25.71%), Postives = 91/210 (43.33%), Query Frame = 2
Query:  125 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            S+  ++ Q +F++    FA   +AP  A+ DQ   FP DV   +        G+    +            +  E ++    S       H N+C   +   G+  Q+ K+ P L + E   +  ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T    G KGI+  ++EKG PG S  +K  K+G     T
Sbjct:   38 SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPT 243          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: Y897_MYCBO (Uncharacterized protein Mb0897 OS=Mycobacterium bovis GN=fadE10 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 48/168 (28.57%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  254 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKLGMRG 745
            K +      G+  P E          +   +  ++    S+G    AH ++ + + ++  G+  QK ++LP+  +G  + A  ++EP+ GSD   M   A  +D G  Y + G K+W TNG VA  LVV A+     G + GI+AF++E   PG +  ++   +G+RG
Sbjct:   88 KGLAELGCFGLKIPSEYGGLNMSQVAYNRVLMMVTTVHSSLGALLSAHQSIGVPEPLKLAGTAEQKRRFLPRCAAGA-ISAFLLTEPDVGSDPARMASTATPIDDGQAYELEGVKLWTTNGVVADLLVVMARVPRSEGHRGGISAFVVEADSPGITVERRNKFMGLRG 254          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: Y873_MYCTU (Uncharacterized protein Rv0873/MT0896 OS=Mycobacterium tuberculosis GN=fadE10 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 48/168 (28.57%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  254 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKLGMRG 745
            K +      G+  P E          +   +  ++    S+G    AH ++ + + ++  G+  QK ++LP+  +G  + A  ++EP+ GSD   M   A  +D G  Y + G K+W TNG VA  LVV A+     G + GI+AF++E   PG +  ++   +G+RG
Sbjct:   88 KGLAELGCFGLKIPSEYGGLNMSQVAYNRVLMMVTTVHSSLGALLSAHQSIGVPEPLKLAGTAEQKRRFLPRCAAGA-ISAFLLTEPDVGSDPARMASTATPIDDGQAYELEGVKLWTTNGVVADLLVVMARVPRSEGHRGGISAFVVEADSPGITVERRNKFMGLRG 254          
The following BLAST results are available for this feature:
BLAST of CN185353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ACAD8_BOVIN3.432e-1627.14Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
GCDH_PIG2.225e-1527.67Glutaryl-CoA dehydrogenase, mitochondrial (Fragmen... [more]
ACAD8_HUMAN2.225e-1525.71Isobutyryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
Y897_MYCBO1.221e-1328.57Uncharacterized protein Mb0897 OS=Mycobacterium bo... [more]
Y873_MYCTU1.221e-1328.57Uncharacterized protein Rv0873/MT0896 OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185353 ID=CN185353; Name=CN185353; organism=Citrus sinensis; type=EST; length=757bp
GAGGGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAGAAGAATGCAGAGGC
TCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGAAGAAGAAA
CATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGACACTCAATT
ACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACATTGCTCCTC
GTGCGGCAAAAATTGACCAATCAAATTCGTTCCCACAGGATGTTAATTTA
TGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGA
ATACGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAG
AAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCT
AATTTGTGCATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGA
CAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCA
TGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCT
GATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCAC
CAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAGACATTA
AAGCTGGCTCAAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCC
GGATTCAGCACTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGA
TACATGT
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