CN185346

Overview
NameCN185346
Unique NameCN185346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.691e-59
Identity = 111/160 (69.38%), Postives = 133/160 (83.12%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            Y+KL E EKNRKL DLLD+L+FNQV+IFVKS SRA ELNKLLV  NFPSI +HS M QEER+ RYK FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLAI+FV S  D ++L ++Q+RF+V I E PE+ +D+STYM
Sbjct:  271 YLKLDEKEKNRKLADLLDSLEFNQVIIFVKSTSRANELNKLLVASNFPSIAVHSAMPQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFVGSKEDEEVLEKIQSRFDVKITEFPEEGVDSSTYM 430          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.691e-59
Identity = 114/160 (71.25%), Postives = 132/160 (82.50%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            YIKLSE EKNRKLN+LLD L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYDMP  AD+YLHRVGRAGRFGTKGL+I+FVSS  D   L  ++ RFEV + E PE+ +D STYM
Sbjct:  283 YIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEEGVDASTYM 442          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.691e-59
Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 814
            YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  281 YIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.691e-59
Identity = 111/160 (69.38%), Postives = 134/160 (83.75%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 814
            YIKL E EKNRKLN+LLD+L+FNQV+IFVKS  RA+EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FVSS  D ++L  ++ RFEV + E P+  +D+S YM
Sbjct:  282 YIKLGESEKNRKLNELLDSLEFNQVIIFVKSTQRASELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSSAYM 441          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.820e-59
Identity = 112/160 (70.00%), Postives = 134/160 (83.75%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 814
            YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  281 YIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.820e-59
Identity = 112/160 (70.00%), Postives = 134/160 (83.75%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 814
            YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  280 YIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 439          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.295e-59
Identity = 109/160 (68.12%), Postives = 132/160 (82.50%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            YIKL E EKNRKL+DLLD+L+FNQV+IFVKS  RA ELNKLL  CNFPSI +HSG+ QEER+ RY+ FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLAI+ V S  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  272 YIKLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCSCNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.222e-59
Identity = 113/160 (70.62%), Postives = 131/160 (81.88%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYM 814
            YI L E EKNRKLN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FV+S  D ++L Q++ RFEV + E P E ID STYM
Sbjct:  273 YIPLEEREKNRKLNELLDELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDKEVLQQIEKRFEVALPEFPKEGIDASTYM 432          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.832e-58
Identity = 112/159 (70.44%), Postives = 133/159 (83.65%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  265 YVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.832e-58
Identity = 112/159 (70.44%), Postives = 133/159 (83.65%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  265 YVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
The following BLAST results are available for this feature:
BLAST of CN185346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_PICGU3.691e-5969.38ATP-dependent RNA helicase SUB2 OS=Pichia guillier... [more]
SUB2_COCIM3.691e-5971.25ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_ASPCL3.691e-5970.00ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_AJECN3.691e-5969.38ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]
SUB2_ASPOR4.820e-5970.00ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_ASPNC4.820e-5970.00ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB2_PICST6.295e-5968.13ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
SUB2_CHAGB8.222e-5970.63ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]
DDX39_RAT1.832e-5870.44ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]
DDX39_MOUSE1.832e-5870.44ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185346 ID=CN185346; Name=CN185346; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATTAACAGTGCCA
TTAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAAT
AACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAATC
CCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCT
GACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAG
AAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAA
ATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGAT
GTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTG
AACCTGATTGAGAATATCGGAGTCGGAAGCAGATGATACAAAAGTAATTG
CAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAA
GTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTC
AATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGT
TCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATG
CCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTT
TAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAA
AGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCA
CTCAATTTGATGTAG
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