CN185343

Overview
NameCN185343
Unique NameCN185343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2679 contig Csv1_Contig2679:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.172e-77
Identity = 150/173 (86.71%), Postives = 156/173 (90.17%), Query Frame = 1
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 9.294e-77
Identity = 149/173 (86.13%), Postives = 156/173 (90.17%), Query Frame = 1
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA Q+SKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.214e-76
Identity = 149/173 (86.13%), Postives = 155/173 (89.60%), Query Frame = 1
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFV+DG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FP  SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 3.655e-73
Identity = 141/169 (83.43%), Postives = 150/169 (88.76%), Query Frame = 1
Query:  118 ISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            ISKKRKFV DG F AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRF  PE SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG P N+Y+++A R
Sbjct:    6 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 174          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.176e-71
Identity = 134/172 (77.91%), Postives = 153/172 (88.95%), Query Frame = 1
Query:  109 ATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            A  ISKKRKFVADG F+AELNE  TREL+E+GYSG EVRVTP R+EIIIRAT TQ+VLGEKGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YGVLR++ME+GA+GCEV++SGKLRA RAKSMKF DG+MI SGQP  +++DSA R
Sbjct:    4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATR 175          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 6.451e-70
Identity = 136/174 (78.16%), Postives = 148/174 (85.06%), Query Frame = 1
Query:  103 NMATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            N    ISKKRKFV+DG F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGRRIRELT++VQKRF F    +ELYAEKV  RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG P N+Y+++A R
Sbjct:    2 NANLPISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATR 175          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.345e-67
Identity = 131/169 (77.51%), Postives = 144/169 (85.21%), Query Frame = 1
Query:  118 ISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            ++KK+K V  G F AELN  L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GRRI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGAQG EVIVSGKLR  RAK+MKF DG MI SG PVN+Y+  AVR
Sbjct:    7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVR 175          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 252.292 bits (643), Expect = 1.487e-66
Identity = 122/173 (70.52%), Postives = 150/173 (86.71%), Query Frame = 1
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            M   ISKKRK VADG F+AELNE  TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLGE GRRI ELT +VQKRFK+   ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R++MESGA+GCEV+VSGKLRA RAK+MKF DG++I SGQPVN+++D+A R
Sbjct:    1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATR 173          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.491e-58
Identity = 116/175 (66.29%), Postives = 140/175 (80.00%), Query Frame = 1
Query:  103 NMATQISKKRKFVADGGFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            N + QISKKRKFVADG F AELNE+ TRE  +D GYSGVE++ +P  TEIIIRA++TQ V+G   RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY ++  IM  GA+GCEVIVSGKLRA RAKSMKF+DGYMI SGQP  +++D A R
Sbjct:    2 NSSLQISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACR 176          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.718e-30
Identity = 64/161 (39.75%), Postives = 103/161 (63.98%), Query Frame = 1
Query:  133 KFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDS 615
            +F+ +G   AEL E   + L  +G+S +E+R+     +II++  +    +GEK  R+R+   +  +R + P+ SVE+  EKV+ +GLCA+ QA  +R K+LGG+  RRA    L+    + AQGC++IVSGKL+  RAKS+KF+DG +I SG  V +Y+++
Sbjct:   21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINT 181          
The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS3_PONAB4.172e-7786.7140S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS32_XENLA9.294e-7786.1340S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS3_ICTPU1.214e-7686.1340S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE3.655e-7383.4340S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_SCHPO1.176e-7177.9140S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_DROME6.451e-7078.1640S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL1.345e-6777.5140S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_YEAST1.487e-6670.5240S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI1.491e-5866.2940S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU1.718e-3039.7540S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bp
CCGATGCAGGCCAGTATATATTATCGCAAACATTAGGGTTTACTGACTAG
AGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGGTGTTGGATTCTGA
GAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATTTGTTGCCGACGGT
GGCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGAGCTTGCGGAAGA
TGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGCGCACTGAGATCA
TCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAGAAGGGAAGAAGG
ATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAAGTTTCCAGAGAA
CAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGGGTCTCTGTGCCA
TTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTCGCTGTT
CGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGAGAGTGGTGCCCA
GGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTCCACGTGCAAAGT
CCATGAAATTTAAAGATGGGTACATGATATCCTCAGGTCAACCTGTGAAT
GAATACCTCGACTCAGCTGTAAGACA
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