CN185343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.688e-20 Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612 ++KFV +G A ++E +L GY G+E+ TP+ T+I ++A + ++G+ G+ IR T + RFK +++ ++V L A A L L G R+A L+ IM+SGA GCEVI++GKL R + KF GY+ G+PV E +D Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVD 163
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19 Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYL 609 ++ FV +G ++E L +L GY G++++VTPV T +I+ A + V+G G+ +R +T ++ F VE+ ++V+ L A + L G+ RR Y ++R IM +GAQG EV +SGK+R R+ KF +GY+ G+P +Y+ Sbjct: 3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYV 161
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.364e-19 Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 KR F+ ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I++L V++K F + + A + N L A A L L G RRA + +R IM SGA G EVIVSGKL + RAK K K+G + SGQ + + +D A+ Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAI 167
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19 Identity = 59/160 (36.88%), Postives = 86/160 (53.75%), Query Frame = 1 Query: 130 RKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYL 609 +KFV G EL+E L EL GY G+ ++ P T+II R +G +GR IR + VQ+RF V + +++ + L A L L G+ RRA YG LR IM +GA+G +I+SGKL RA++ KF +G + G+P +EY+ Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19 Identity = 51/156 (32.69%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 ++ FV +G ++E L +EL GY G++V++TP+ T +++ A R V+G G+ +R +T+ ++ F +E+ ++V+ L A + L G+ RR Y +R IM +GAQG EV +SGK+R R+ KF +GY+ G+P Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEP 156
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19 Identity = 51/160 (31.87%), Postives = 93/160 (58.13%), Query Frame = 1 Query: 133 KFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612 +F+ G ++++E ELA GY G+E+ TP+ +I+++A + V+G+ G+ IR++T+ +++RF + +++ ++V L A A+ L L G R+A + + IMESGA G E+++SGK+ R + KF GY+ +G+P E +D Sbjct: 6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVD 163
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19 Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 KR F+ +++E L ++ Y+GVEV TP+ T +II A R ++G GR I++L + +K F + + V N L A A L L G RRA + +R IM +GA G E+I+SGKL RA+ K K+G + SGQ + + +D A+ Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAI 167
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18 Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 1 Query: 130 RKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 RK ++ G + LNE L R+L Y + TP+ T++I+ A V+G KG I+ + V+++ F +++ +V N+ L A A + L+ G+ RRA L IM +GA+G E+++SGKL + R ++ KF GY+ SG+P E +D A+ Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAI 167
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18 Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612 +R F+ + ++E L +L GYS ++V+ TP+ T I + A + V+G KG+ ++ELT + K+ N ++ +++ + L A A+ + L G+ RR + +R +M GA+G VIVSGKL R+++ K+ +GYM G+P E +D Sbjct: 3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVD 162
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18 Identity = 50/165 (30.30%), Postives = 97/165 (58.79%), Query Frame = 1 Query: 118 ISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612 ++ + +F+ +G ++++E EL GY G++V TP+ T+I+++A + V+G+ G+ IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + + I+ESGA G E+++SGK+ R++ KF GY+ +G+P E +D Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVD 163 The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bpback to top |