CN185343

Overview
NameCN185343
Unique NameCN185343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.688e-20
Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612
            ++KFV +G   A ++E    +L   GY G+E+  TP+ T+I ++A +   ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D
Sbjct:    4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVD 163          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYL 609
            ++ FV +G     ++E L  +L   GY G++++VTPV T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GAQG EV +SGK+R  R+   KF +GY+   G+P  +Y+
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYV 161          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.364e-19
Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            KR F+        ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  V++K F      + + A +  N  L A   A  L   L  G   RRA +  +R IM SGA G EVIVSGKL + RAK  K K+G +  SGQ + + +D A+
Sbjct:    5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAI 167          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19
Identity = 59/160 (36.88%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  130 RKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYL 609
            +KFV  G    EL+E L  EL   GY G+ ++  P  T+II    R    +G +GR IR +   VQ+RF      V +  +++ +  L     A  L   L  G+  RRA YG LR IM +GA+G  +I+SGKL   RA++ KF +G +   G+P +EY+
Sbjct:   12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 51/156 (32.69%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594
            ++ FV +G     ++E L +EL   GY G++V++TP+ T +++ A R   V+G  G+ +R +T+ ++  F      +E+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GAQG EV +SGK+R  R+   KF +GY+   G+P
Sbjct:    3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEP 156          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 51/160 (31.87%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  133 KFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612
            +F+  G   ++++E    ELA  GY G+E+  TP+  +I+++A +   V+G+ G+ IR++T+ +++RF   +  +++  ++V    L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R +  KF  GY+  +G+P  E +D
Sbjct:    6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVD 163          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            KR F+       +++E L ++     Y+GVEV  TP+ T +II A R   ++G  GR I++L  + +K F      + +    V N  L A   A  L   L  G   RRA +  +R IM +GA G E+I+SGKL   RA+  K K+G +  SGQ + + +D A+
Sbjct:    5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAI 167          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  130 RKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            RK ++ G  +  LNE L R+L    Y   +   TP+ T++I+ A     V+G KG  I+ +  V+++ F      +++   +V N+ L A   A  +   L+ G+  RRA    L  IM +GA+G E+++SGKL + R ++ KF  GY+  SG+P  E +D A+
Sbjct:    6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAI 167          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612
            +R F+ +      ++E L  +L   GYS ++V+ TP+ T I + A +   V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GA+G  VIVSGKL   R+++ K+ +GYM   G+P  E +D
Sbjct:    3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVD 162          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 50/165 (30.30%), Postives = 97/165 (58.79%), Query Frame = 1
Query:  118 ISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612
            ++ + +F+ +G   ++++E    EL   GY G++V  TP+ T+I+++A +   V+G+ G+ IR++T  ++ RF   +  +++  ++V+   L A   A+ L   L  G   R+A +  +  I+ESGA G E+++SGK+   R++  KF  GY+  +G+P  E +D
Sbjct:    1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVD 163          
The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS3_UNCMA4.688e-2035.1930S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_METST1.044e-1932.9230S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_SULAC1.364e-1936.3630S ribosomal protein S3P OS=Sulfolobus acidocalda... [more]
RS3_METKA3.969e-1936.8830S ribosomal protein S3P OS=Methanopyrus kandleri... [more]
RS3_METS36.770e-1932.6930S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_HALSA6.770e-1931.8830S ribosomal protein S3P OS=Halobacterium salinar... [more]
RS3_SULSO8.841e-1934.5530S ribosomal protein S3P OS=Sulfolobus solfataric... [more]
RS3_THEPD1.155e-1832.9330S ribosomal protein S3P OS=Thermofilum pendens (... [more]
RS3_META31.155e-1831.4830S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_HALWD1.155e-1830.3030S ribosomal protein S3P OS=Haloquadratum walsbyi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bp
CCGATGCAGGCCAGTATATATTATCGCAAACATTAGGGTTTACTGACTAG
AGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGGTGTTGGATTCTGA
GAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATTTGTTGCCGACGGT
GGCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGAGCTTGCGGAAGA
TGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGCGCACTGAGATCA
TCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAGAAGGGAAGAAGG
ATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAAGTTTCCAGAGAA
CAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGGGTCTCTGTGCCA
TTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTCGCTGTT
CGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGAGAGTGGTGCCCA
GGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTCCACGTGCAAAGT
CCATGAAATTTAAAGATGGGTACATGATATCCTCAGGTCAACCTGTGAAT
GAATACCTCGACTCAGCTGTAAGACA
back to top