CN185343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18 Identity = 50/164 (30.49%), Postives = 86/164 (52.44%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618 +R FV + ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + K + +E+ ++V N L + L G+ RR + +R +M SGA+G +IVSGKL R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17 Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 K+ F+ +++E L + GYS VE++ TP+ T +II A R+ ++G +G+ I+++T V+++ F P V + KV L A A L L G RRA Y LR IM +GA G +V VSGKLR RA+ K+ G + SG V D A+ Sbjct: 9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAI 171
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17 Identity = 48/164 (29.27%), Postives = 84/164 (51.22%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618 +R FV + ++E +L GYS ++ + TP+ T I + A + V+G KG+ ++ELT + + +E+ ++V N L + L G+ R+ + +R +M SGA+G +IVSGKL R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17 Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 1 Query: 166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I++L ++++ F ++ ++ V N L A A L L G RRA + +R IM +GA G EVI+SGKL + RAK K K+G + SG +++ +D AV Sbjct: 18 VDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAV 167
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17 Identity = 47/164 (28.66%), Postives = 86/164 (52.44%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618 +R FV + ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + + N+ ++ ++V + L + L G+ R+ + +R +M SGA+G +IVSGKL R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17 Identity = 47/159 (29.56%), Postives = 84/159 (52.83%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNE 603 +R F+A+ ++E +L GYS +E++ TP+ T I + A + V+G KG+ ++ELT + + +K +E+ + + L + L G+ R+ + +R +M +GA+G +I+SGKL R+++ KF DGYM G+P E Sbjct: 3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEE 159
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17 Identity = 47/164 (28.66%), Postives = 86/164 (52.44%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618 +R FV + ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + + N+ ++ ++V + L + L G+ R+ + +R +M SGA+G +IVSGKL R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16 Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 1 Query: 106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618 M T++ K F+ G +++E L + E GYS V+V T + T I I A R ++G +G IR L V Q F P + + E+ N L A QA + + G+ RR + + IM +GA G E+ +SGKL + RA+ KFK G + SG V+E +D A Sbjct: 1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRA 167
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15 Identity = 48/165 (29.09%), Postives = 85/165 (51.52%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 KR F+ +++E L + GY+GV++ P+ T +II A R ++G +G IR+L ++ + F ++ ++ +V N L A A + L G RR + R ++ +GA G ++++SGKLR RA+ K + G + ++G V +D AV Sbjct: 5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAV 167
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15 Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 1 Query: 166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 ++E L +E Y+G E+ TP+ T + I A R ++G+ G+ I+ L +++K F + ++ + L A A L L G RRA + +R IM +GA G EVIVSGK+ + RAK K K+G + +G ++ +D A+ Sbjct: 18 VDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAI 167 The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bpback to top |