CN185343

Overview
NameCN185343
Unique NameCN185343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2679 contig Csv1_Contig2679:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 50/164 (30.49%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618
            +R FV +      ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGA+G  +IVSGKL   R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            K+ F+       +++E L  +    GYS VE++ TP+ T +II A R+  ++G +G+ I+++T V+++ F  P   V +   KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR  RA+  K+  G +  SG  V    D A+
Sbjct:    9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAI 171          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 48/164 (29.27%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618
            +R FV +      ++E    +L   GYS ++ + TP+ T I + A +   V+G KG+ ++ELT  +   +      +E+  ++V N  L        +   L  G+  R+  +  +R +M SGA+G  +IVSGKL   R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  ++++ F    ++ ++    V N  L A   A  L   L  G   RRA +  +R IM +GA G EVI+SGKL + RAK  K K+G +  SG  +++ +D AV
Sbjct:   18 VDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAV 167          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 47/164 (28.66%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618
            +R FV +      ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGA+G  +IVSGKL   R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 47/159 (29.56%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNE 603
            +R F+A+      ++E    +L   GYS +E++ TP+ T I + A +   V+G KG+ ++ELT  + + +K     +E+  + +    L        +   L  G+  R+  +  +R +M +GA+G  +I+SGKL   R+++ KF DGYM   G+P  E
Sbjct:    3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEE 159          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 47/164 (28.66%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618
            +R FV +      ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGA+G  +IVSGKL   R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 1
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSA 618
            M T++ K   F+  G    +++E L +   E GYS V+V  T + T I I A R   ++G +G  IR L  V Q  F  P   + +  E+  N  L A  QA  +   +  G+  RR  +  +  IM +GA G E+ +SGKL + RA+  KFK G +  SG  V+E +D A
Sbjct:    1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRA 167          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 48/165 (29.09%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            KR F+       +++E L +     GY+GV++   P+ T +II A R   ++G +G  IR+L ++ +  F    ++ ++   +V N  L A   A  +   L  G   RR    + R ++ +GA G ++++SGKLR  RA+  K + G + ++G  V   +D AV
Sbjct:    5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAV 167          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            ++E L +E     Y+G E+  TP+ T + I A R   ++G+ G+ I+ L  +++K F     + ++   +     L A   A  L   L  G   RRA +  +R IM +GA G EVIVSGK+ + RAK  K K+G +  +G  ++  +D A+
Sbjct:   18 VDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAI 167          
The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS3_METM52.572e-1830.4930S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_IGNH42.178e-1735.7630S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_METMP3.715e-1729.2730S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_SULTO4.851e-1734.8730S ribosomal protein S3P OS=Sulfolobus tokodaii G... [more]
RS3_METM76.336e-1728.6630S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METVS8.275e-1729.5630S ribosomal protein S3P OS=Methanococcus vanniel... [more]
RS3_METM68.275e-1728.6630S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_AERPE1.081e-1634.5030S ribosomal protein S3P OS=Aeropyrum pernix GN=r... [more]
RS3_HYPBU2.038e-1529.0930S ribosomal protein S3P OS=Hyperthermus butylicu... [more]
RS3_METS57.746e-1532.2430S ribosomal protein S3P OS=Metallosphaera sedula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bp
CCGATGCAGGCCAGTATATATTATCGCAAACATTAGGGTTTACTGACTAG
AGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGGTGTTGGATTCTGA
GAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATTTGTTGCCGACGGT
GGCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGAGCTTGCGGAAGA
TGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGCGCACTGAGATCA
TCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAGAAGGGAAGAAGG
ATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAAGTTTCCAGAGAA
CAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGGGTCTCTGTGCCA
TTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTCGCTGTT
CGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGAGAGTGGTGCCCA
GGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTCCACGTGCAAAGT
CCATGAAATTTAAAGATGGGTACATGATATCCTCAGGTCAACCTGTGAAT
GAATACCTCGACTCAGCTGTAAGACA
back to top