CN185343

Overview
NameCN185343
Unique NameCN185343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2679 contig Csv1_Contig2679:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_ARCFU (30S ribosomal protein S3P OS=Archaeoglobus fulgidus GN=rps3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594
            +RKFV +      + E +  E+   G+ GV++  TP+ T++ +   R   V+G+ GRRI+ LT   +K   F   + ++  ++V      A   A  L   L  G   RRA Y  L  IME+GA+GCE+ +SGKL + RA++ KF  G ++ +G P
Sbjct:    4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDP 156          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            L+E L     + GY+G+E+  TP    ++I A     ++G  G  IR+L +++Q  F     +V +    V +  L A   A  +   L   +  RR    +LR +ME+GA G E+I+SGKLR+ RA+  K K G +  +G  V+  +D AV
Sbjct:   20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAV 169          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 45/153 (29.41%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            + E L   LA+ GY   E+  TP+ T I+I A R   ++G KG  ++E++S++  +       +++    K+    L     A  +   +  G+  RR  +  +R +ME+GA+G E++VSGKL   RAK  K   G +   G      +  AV
Sbjct:   24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAV 176          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 46/157 (29.30%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  124 KKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594
            K+++FV D      ++E L +E    G+ G+E++ TP  T I +   R   V+G  G +I+E+T  ++KRF      +E+  ++VN   L     ++ +   L  G   R+A    LR +++  A G  + + GK+   RA++ KF  G +  SG+P
Sbjct:    2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEP 156          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 41/153 (26.80%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            + E L  +L++ GY   E+  TP+ T I+I A R   ++G+KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GA+G E++VSGKL   RA+  K   G +   G      +  AV
Sbjct:   24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAV 176          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  163 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSG 588
            +L E L   + + G+SGVEV   P  T+I +  TR   V+G KG  IRELT  ++K F      V++  +++    L        +   +  G A RRA    ++ IME   A G ++ +SGKLR  R+   K   G +  +G
Sbjct:   16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAG 156          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621
            + E L   L++ GY   E+  TP+ T I+I A R   ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GA+G E++VSGKL   RA+  K   G +   G      +  AV
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAV 176          
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 42/157 (26.75%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  124 KKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594
            K+RKFV +      + E L +E    G+  + ++ TP  T I +   R   V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L+  +++GA+G  + +SGK+   RA+  KF  G +  SG+P
Sbjct:    2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEP 156          
The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS3_ARCFU1.012e-1433.9730S ribosomal protein S3P OS=Archaeoglobus fulgidu... [more]
RS3_STAMF5.020e-1432.8930S ribosomal protein S3P OS=Staphylothermus marin... [more]
RS3_PYRCJ1.237e-1229.4130S ribosomal protein S3P OS=Pyrobaculum calidifon... [more]
RS3_PICTO2.109e-1229.3030S ribosomal protein S3P OS=Picrophilus torridus ... [more]
RS3_PYRIL3.046e-1126.8030S ribosomal protein S3P OS=Pyrobaculum islandicu... [more]
RS3_CENSY3.046e-1132.1730S ribosomal protein S3P OS=Cenarchaeum symbiosum... [more]
RS3_PYRAE5.195e-1126.8030S ribosomal protein S3P OS=Pyrobaculum aerophilu... [more]
RS3_THEVO8.862e-1126.7530S ribosomal protein S3P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bp
CCGATGCAGGCCAGTATATATTATCGCAAACATTAGGGTTTACTGACTAG
AGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGGTGTTGGATTCTGA
GAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATTTGTTGCCGACGGT
GGCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGAGCTTGCGGAAGA
TGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGCGCACTGAGATCA
TCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAGAAGGGAAGAAGG
ATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAAGTTTCCAGAGAA
CAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGGGTCTCTGTGCCA
TTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTCGCTGTT
CGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGAGAGTGGTGCCCA
GGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTCCACGTGCAAAGT
CCATGAAATTTAAAGATGGGTACATGATATCCTCAGGTCAACCTGTGAAT
GAATACCTCGACTCAGCTGTAAGACA
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