CN185343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_ARCFU (30S ribosomal protein S3P OS=Archaeoglobus fulgidus GN=rps3p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +RKFV + + E + E+ G+ GV++ TP+ T++ + R V+G+ GRRI+ LT +K F + ++ ++V A A L L G RRA Y L IME+GA+GCE+ +SGKL + RA++ KF G ++ +G P Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDP 156
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14 Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 L+E L + GY+G+E+ TP ++I A ++G G IR+L +++Q F +V + V + L A A + L + RR +LR +ME+GA G E+I+SGKLR+ RA+ K K G + +G V+ +D AV Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAV 169
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12 Identity = 45/153 (29.41%), Postives = 75/153 (49.02%), Query Frame = 1 Query: 166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 + E L LA+ GY E+ TP+ T I+I A R ++G KG ++E++S++ + +++ K+ L A + + G+ RR + +R +ME+GA+G E++VSGKL RAK K G + G + AV Sbjct: 24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAV 176
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12 Identity = 46/157 (29.30%), Postives = 81/157 (51.59%), Query Frame = 1 Query: 124 KKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 K+++FV D ++E L +E G+ G+E++ TP T I + R V+G G +I+E+T ++KRF +E+ ++VN L ++ + L G R+A LR +++ A G + + GK+ RA++ KF G + SG+P Sbjct: 2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEP 156
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11 Identity = 41/153 (26.80%), Postives = 77/153 (50.33%), Query Frame = 1 Query: 166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 + E L +L++ GY E+ TP+ T I+I A R ++G+KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GA+G E++VSGKL RA+ K G + G + AV Sbjct: 24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAV 176
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11 Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 1 Query: 163 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSG 588 +L E L + + G+SGVEV P T+I + TR V+G KG IRELT ++K F V++ +++ L + + G A RRA ++ IME A G ++ +SGKLR R+ K G + +G Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAG 156
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11 Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 1 Query: 166 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAV 621 + E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GA+G E++VSGKL RA+ K G + G + AV Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAV 176
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 42/157 (26.75%), Postives = 81/157 (51.59%), Query Frame = 1 Query: 124 KKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 K+RKFV + + E L +E G+ + ++ TP T I + R V+G +G +++++T ++K++ +E+ + V + L A+ + L G + R+A L+ +++GA+G + +SGK+ RA+ KF G + SG+P Sbjct: 2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEP 156 The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bpback to top |