DC887797

Overview
NameDC887797
Unique NameDC887797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.667e-35
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = -3
Query:  140 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 520
            R  AA LK+SGK+++P W DIVK    KELAP D +W+YIRAAS  R +Y RGG+GVGS  +IYGG KRNG CP HFS  S +VAR +L  L+   ++E D  GGRR+T  G RDLD++AG++A  +
Sbjct:   18 RALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLTPQGTRDLDRIAGQVAAAS 144          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 3.483e-35
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            R  AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:   16 RALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 3.483e-35
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            R  AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:   16 RALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.483e-35
Identity = 68/127 (53.54%), Postives = 92/127 (72.44%), Query Frame = -3
Query:  140 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 520
            R  AA LK+SGK+++P W D+VK G  KELAP D +W+YIRAAS  R +Y RGG GVGS  +IYGG +RNG CP H+S+ S +VAR +L  L+   +IE D  GGRR+T+ G RDLD++AG+++  +
Sbjct:   16 RALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVSAAS 142          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.728e-34
Identity = 68/121 (56.20%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  158 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAG 520
            R  AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG
Sbjct:   16 RALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAG 136          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_PAGMA (40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.029e-34
Identity = 67/124 (54.03%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  149 RPYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 520
            R  AA LK+SGK+++P W D+VK G  KELAP D +W+YIR+AS  R +Y RGG GVGS  +IYG  +RNG CP H+S  S +VAR +L  L+   +IE D  GGRR+T+ G RDLD++AG++A
Sbjct:   16 RALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVA 139          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.260e-33
Identity = 66/118 (55.93%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  161 YAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVA 514
            YAA LKRSGK+  P W DIVKTGT KELAPYDPDWYY+RAA++AR IY R  +GVG   ++YGG    G  P H    SGSV R ++  L+   ++E    GGRRI+  GQRDLD++A
Sbjct:   18 YAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.260e-33
Identity = 66/118 (55.93%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  161 YAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVA 514
            YAA LKRSGK+  P W DIVKTGT KELAPYDPDWYY+RAA++AR IY R  +GVG   ++YGG    G  P H    SGSV R ++  L+   ++E    GGRRI+  GQRDLD++A
Sbjct:   18 YAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_DICDI (40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.560e-33
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = -3
Query:  152 YAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDS-KGGRRITSSGQRDLDQVAGRI 514
            YA  LK++G++++P WNDI KT T +EL P +PDW Y R A++ARK+Y RGG GV + RR++GG +RNG  P HF+  +G   R+ L QLQN  +IE D+ KGGR IT++G+RDLD++A +I
Sbjct:   20 YARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQI 141          
BLAST of DC887797 vs. ExPASy Swiss-Prot
Match: RS19_AEQIR (40S ribosomal protein S19 OS=Aequipecten irradians GN=RPS19 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.618e-32
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = -3
Query:  152 AAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSCRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRI 511
            AA LK+SGK+++P W  I+K     EL+PYD DW+Y RAAS+ R +Y R   GVG+  +IYG  KRNG+ P H+ +SSGSVAR +L  L+   ++E D+ GGR++TS GQ+DLD++A ++
Sbjct:   18 AAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKDANGGRKLTSQGQKDLDRIAAQV 137          
The following BLAST results are available for this feature:
BLAST of DC887797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_ICTPU2.667e-3555.1240S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19_RAT3.483e-3555.6540S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE3.483e-3555.6540S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_GILMI3.483e-3553.5440S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19_PIG1.728e-3456.2040S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19_PAGMA5.029e-3454.0340S ribosomal protein S19 OS=Pagrus major GN=rps19... [more]
RS19B_SCHPO3.260e-3355.9340S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19A_SCHPO3.260e-3355.9340S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19_DICDI5.560e-3352.4640S ribosomal protein S19 OS=Dictyostelium discoid... [more]
RS19_AEQIR1.618e-3250.0040S ribosomal protein S19 OS=Aequipecten irradians... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887797 EIC Citrus sinensis cDNA clone EIC0901 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887797 ID=DC887797; Name=DC887797; organism=Citrus sinensis; type=EST; length=522bp
ANANANTTCTTATCATTCATCTTAGGTTACTAACAGAGAACTGAAAATCA
ACTAACGATGCTTTCTATCTACTACTCCCATTCAAACAACTAACTCAATA
ACATCAATCCTTTTGAAAGCTTGAGCTAATCCCTCAAGGGGCAACAACTG
CAATCCGTCCAGCAACTTGATCAAGATCCCGCTGCCCACTGGATGTGATT
CTCCTTCCACCCTTGGAGTCAAGCTCGATGATGTTCGTGTTCTGCAATTG
GTGAAGTATGTGACGAGCAACAGAGCCACTGCTCTTGCTGAAATGAGGTG
GGCAGCTACCGTTCCTCTTCCCCCCTCCATAGATTCTACGGCAGGAACCA
ACACCAAGACCACCCCTAAAGTAGATCTTCCTCGCCATTGAAGCAGCCCT
GATATAGTACCAATCGGGGTCATAAGGGGCTAGCTCCTTCAACGTTCCAG
TCTTGACGATGTCGTTCCAAGTAGGAAGCTCAATCTTGCCGGAACGTTTG
AGATGGGCGGCGTAAGGCCTTG
back to top