CN185317

Overview
NameCN185317
Unique NameCN185317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBP4B_XENLA (Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-B PE=1 SV=3)

HSP 1 Score: 277.33 bits (708), Expect = 7.783e-74
Identity = 127/191 (66.49%), Postives = 155/191 (81.15%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S +V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+    G+LLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICL 204          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP4_DANRE (Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 1.468e-72
Identity = 126/191 (65.97%), Postives = 154/191 (80.63%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+SV +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT +++V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+      LLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSVHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEGYGLSWNPNLRSCLLSASDDHTICL 204          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBP4A_XENLA (Histone-binding protein RBBP4-A OS=Xenopus laevis GN=rbbp4-A PE=1 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 7.285e-72
Identity = 124/191 (64.92%), Postives = 154/191 (80.63%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WL D   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +I HDGEVNRARYMPQNP +IATKT +++V VFDY+KHPSKP   G C+P+LRLRGH  E YGLSW+    G+LLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLSDVTRPDGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKITHDGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECNPNLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICL 204          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_DANRE (Histone-binding protein RBBP7 OS=Danio rerio GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 7.285e-72
Identity = 126/192 (65.62%), Postives = 155/192 (80.73%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDR-SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY V +++LGTHTS+ E N+L++A  Q+P DD++ DA HYD ++ ++FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT +++V  FDY+KHPSKP   G CSPDLRLRGH  E YGLSW+    G+LLS SDD  ICL
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVNRPEGKDYVVHRLVLGTHTSD-EQNHLVIASAQIPNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSDVLAFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICL 204          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: CAF1_DROME (Probable histone-binding protein Caf1 OS=Drosophila melanogaster GN=Caf1 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 9.514e-72
Identity = 126/191 (65.97%), Postives = 153/191 (80.10%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD  +  GKDYSV ++ILGTHTS+ E N+L++A VQLP +D++ D  HYD+++ +FGGFG   GK++I  +INH+GEVNRARYMPQN  +IATKT S++V VFDY+KHPSKP   G C PDLRLRGH  E YGLSW+    G+LLS SDD  ICL
Sbjct:   19 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL 208          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_RAT (Histone-binding protein RBBP7 OS=Rattus norvegicus GN=Rbbp7 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.623e-71
Identity = 122/191 (63.87%), Postives = 154/191 (80.63%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+ E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  +CL
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD-EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCL 203          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_MOUSE (Histone-binding protein RBBP7 OS=Mus musculus GN=Rbbp7 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.623e-71
Identity = 122/191 (63.87%), Postives = 154/191 (80.63%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+ E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  +CL
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD-EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCL 203          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_MACFA (Histone-binding protein RBBP7 OS=Macaca fascicularis GN=RBBP7 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.623e-71
Identity = 122/191 (63.87%), Postives = 154/191 (80.63%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+ E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  +CL
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD-EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCL 203          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_HUMAN (Histone-binding protein RBBP7 OS=Homo sapiens GN=RBBP7 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.623e-71
Identity = 122/191 (63.87%), Postives = 154/191 (80.63%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+ E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  +CL
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD-EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCL 203          
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_CHICK (Histone-binding protein RBBP7 OS=Gallus gallus GN=RBBP7 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.768e-71
Identity = 124/191 (64.92%), Postives = 154/191 (80.63%), Query Frame = 1
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+I+EEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+ E N+L++A+VQ+P DD + D   YD ++ +FGGFG   GK++   +INH+GEVNRARYMPQNP++IATKT SA+V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+   +GHLLS SDD  +CL
Sbjct:   14 RVISEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVSRPEGKDYALHWLVLGTHTSD-EQNHLVVARVQIPNDD-QFDTSQYDSEKGEFGGFGSVTGKIETEIKINHEGEVNRARYMPQNPYIIATKTPSADVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNSNLKGHLLSASDDHTVCL 202          
The following BLAST results are available for this feature:
BLAST of CN185317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RBP4B_XENLA7.783e-7466.49Histone-binding protein RBBP4-B OS=Xenopus laevis ... [more]
RBBP4_DANRE1.468e-7265.97Histone-binding protein RBBP4 OS=Danio rerio GN=rb... [more]
RBP4A_XENLA7.285e-7264.92Histone-binding protein RBBP4-A OS=Xenopus laevis ... [more]
RBBP7_DANRE7.285e-7265.63Histone-binding protein RBBP7 OS=Danio rerio GN=rb... [more]
CAF1_DROME9.514e-7265.97Probable histone-binding protein Caf1 OS=Drosophil... [more]
RBBP7_RAT1.623e-7163.87Histone-binding protein RBBP7 OS=Rattus norvegicus... [more]
RBBP7_MOUSE1.623e-7163.87Histone-binding protein RBBP7 OS=Mus musculus GN=R... [more]
RBBP7_MACFA1.623e-7163.87Histone-binding protein RBBP7 OS=Macaca fascicular... [more]
RBBP7_HUMAN1.623e-7163.87Histone-binding protein RBBP7 OS=Homo sapiens GN=R... [more]
RBBP7_CHICK2.768e-7164.92Histone-binding protein RBBP7 OS=Gallus gallus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185317 ID=CN185317; Name=CN185317; organism=Citrus sinensis; type=EST; length=878bp
GGGGGGGAAGCTAGCGGGCCCCCTCGCTTCTTTGTCGTTTTTTGGGTTCT
ATTTCGTCGAGAGAAAGGGAGCAATCGGTTCATCTGCTGAGATAGAGGTT
TTGGCGCCGTTTCCTCCTCCGCTCGCCAGTTCCATTTTAATAATAATTTA
CCGTTAGGGGAAGCAAATAATTGTAAAAGCAGATGAATGGAGTTGCATCT
ACCTCAGTTGCAGAAGTAGGACTTTGGCGGCAACAAAACTTAAGAAATTG
AGCGAAGAGCAATGGGAAAAGACGAGGAAGAGATGAGGGGAGAGATAGAA
GAGAGGTTGATAAATGAAGAATACAAGATTTGGAAGAAGAACACTCCGTT
TCTGTATGATCTTGTCATCACACATGCCCTTGAATGGCCTTCTCTGACTG
TTGAGTGGTTGCCTGATAGAGAAGAACCCCCTGGCAAAGACTATTCTGTT
CAGAAAATGATCCTTGGGACACACACATCTGAGAATGAGCCCAACTATCT
CATGCTTGCTCAGGTCCAGCTTCCTCTTGATGACTCAGAGAATGATGCCC
GCCATTACGATGATGACCGCTCTGATTTTGGTGGCTTTGGCTGTGCCAAT
GGCAAGGTGCAAATAATTCAGCAAATAAACCATGATGGAGAGGTTAACCG
GGCCCGTTATATGCCTCAGAATCCATTTCTTATTGCCACGAAGACTGTTA
GTGCTGAGGTCTATGTTTTTGATTATAGCAAACACCCTTCTAAACCTCCT
CTGGATGGTGCATGTAGTCCTGATCTGAGGCTGAGGGGCCATAGCACTGA
ANGATACGGTTTATCGTGGAGCAAGTTCAAGGAAGGTCATCTGTTAAGTG
GTTCTGATGATGCTCAAATATGTTTATG
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