CN185314

Overview
NameCN185314
Unique NameCN185314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185314 vs. ExPASy Swiss-Prot
Match: VATE_NEUCR (V-type proton ATPase subunit E OS=Neurospora crassa GN=vma-4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 56/156 (35.90%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  174 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQK 641
            ++D  V +++++M  FI+QEAEEKA EI + A+EEF IEK +LV  E   I   Y +K KQ ++ ++I  S   N +R++VL A+ +L+  + EAAS ++   + D   YK +L+ LI++    + EP +++R R+ D+  V      A  +Y  K
Sbjct:    7 LSDDQVGQELRKMTAFIKQEAEEKAREIQIKADEEFAIEKSKLVRQETDAIDSAYAKKFKQAQMSQQITRSTMANKTRLRVLGARQELLDEIFEAASAQLGQATHDLGRYKDILRDLILEGFYAMNEPELVIRARQADYDAVREAAGWASAQYKHK 162          
BLAST of CN185314 vs. ExPASy Swiss-Prot
Match: VATE_YEAST (V-type proton ATPase subunit E OS=Saccharomyces cerevisiae GN=VMA4 PE=1 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 60/184 (32.61%), Postives = 107/184 (58.15%), Query Frame = 3
Query:  138 INNLIKSKDPAKMNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 689
            +++ I +  P ++ND     ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++  + D  L+ES+ +    EY +K Q  P E IV  + YL
Sbjct:    1 MSSAITALTPNQVND-----ELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYL 179          
BLAST of CN185314 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 53/172 (30.81%), Postives = 99/172 (57.56%), Query Frame = 3
Query:  174 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 689
            ++D  V  ++ +M  FI +EA+EKA EI + A+EE+ IEK  +V +E   I   YE+K K+  + ++I  S   N +R+++L  +D+++  + + A  E+  +++D   YK +L GLI + +L L EP V ++ R+ D  + +  +  A + + +K +    EI +D   +L
Sbjct:    3 LSDEQVKSELSKMQAFIEKEAKEKAKEIKLKADEEYEIEKASIVRSETAAIDSTYEQKLKKASLAQQITKSTIGNKTRLRILSTKDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLIEEGVLALMEPKVSIKVREQDVDVAKEAITEAAKNFEEKAK-FKVEISIDDKNFL 173          
BLAST of CN185314 vs. ExPASy Swiss-Prot
Match: VATE_SCHPO (V-type proton ATPase subunit E OS=Schizosaccharomyces pombe GN=vma4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 50/156 (32.05%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  174 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQK 641
            ++D  V  ++ +MV FI+QEA EKA EI   +EEEF +EK ++V  +   I Q Y+ K K+  + +KI  S  LN SR+++L ++  ++ ++     K++  + +  ++Y K +  LIVQ++  L EP  ++  R+ D  +V++ +  A E    K
Sbjct:    3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSK 158          
The following BLAST results are available for this feature:
BLAST of CN185314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_NEUCR1.179e-2335.90V-type proton ATPase subunit E OS=Neurospora crass... [more]
VATE_YEAST3.429e-2332.61V-type proton ATPase subunit E OS=Saccharomyces ce... [more]
VATE_CANAL1.441e-2130.81V-type proton ATPase subunit E OS=Candida albicans... [more]
VATE_SCHPO3.004e-1932.05V-type proton ATPase subunit E OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185314 ID=CN185314; Name=CN185314; organism=Citrus sinensis; type=EST; length=719bp
GCAGGAAACCAAGGGGACTCGTCACTCGTGATCGTAAATTATAGGAAGCA
GGAAAACCCACCTGTTACTAACCTTACCCGCACCGTCTGTCTCTCCTTAG
CGATCGAAGAAAGTCGAATCGCTCTTCTCATTTTGATATCAACAATCTAA
TCAAATCAAAAGATCCCGCGAAAATGAACGACGCTGATGTTTCGAAGCAG
ATCCAGCAGATGGTGCGGTTTATCCGCCAAGAAGCTGAAGAGAAAGCCAA
CGAGATCTCAGTTTCTGCCGAAGAAGAATTCAACATAGAGAAGTTGCAGC
TGGTGGAAGCAGAGAAGAAGAAGATCAGACAAGAGTACGAGCGGAAAGAG
AAGCAAGTCGAAATCAGAAAGAAGATTGAGTACTCCATGCAGCTGAATGC
TTCTCGGATCAAAGTTCTTCAAGCTCAGGATGATTTGGTCAGTAATATGA
TGGAGGCAGCATCAAAGGAGGTTTTGAATGTGAGTCGCGATCACAATTCA
TATAAGAAGCTTTTGAAGGGTCTTATTGTTCAGAGTTTGCTCAGGCTGAA
AGAGCCAGCTGTGTTACTGAGATGCCGCAAAGATGACCATCATTTGGTGG
AGTCTGTTTTGGAGTCAGCAAAAGAGGAATATGCACAGAAATTGCAGGTT
CACCCACCAGAGATAATTGTGGATCATCACATCTATCTTCCGCCTGGCCC
TGGACATCATAATGCCCAT
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