CN185313

Overview
NameCN185313
Unique NameCN185313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE_YEAST (V-type proton ATPase subunit E OS=Saccharomyces cerevisiae GN=VMA4 PE=1 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 3.657e-21
Identity = 61/191 (31.94%), Postives = 103/191 (53.93%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            +E+ IEK  +V  E   I   ++ K K+  + ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++  + D  L+ES+ +    EY +K Q  P E IV  + YL              SGGVVV++   KI   NTL+ RL ++  + LP IR +L
Sbjct:   41 QEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL---------VSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLEL 222          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.390e-20
Identity = 57/191 (29.84%), Postives = 103/191 (53.93%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EE+ IEK  +V +E   I   YE+K K+  + ++I  S   N +R+++L  +D+++  + + A  E+  +++D   YK +L GLI + +L L EP V ++ R+ D  + +  +  A + + +K +    EI +D   +L              +GG+VV +  GKI  +NTL+ RL ++  + LP IR +L
Sbjct:   36 EEYEIEKASIVRSETAAIDSTYEQKLKKASLAQQITKSTIGNKTRLRILSTKDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLIEEGVLALMEPKVSIKVREQDVDVAKEAITEAAKNFEEKAK-FKVEISIDDKNFL----------AKDIAGGIVVVNGSGKIEVDNTLEERLKILSEEALPAIRLEL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE_NEUCR (V-type proton ATPase subunit E OS=Neurospora crassa GN=vma-4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19
Identity = 57/194 (29.38%), Postives = 95/194 (48.97%), Query Frame = -2
Query:  195 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 776
            EEF IEK +LV  E   I   Y +K KQ ++ ++I  S   N +R++VL A+ +L+  + EAAS ++   + D   YK +L+ LI++    + EP +++R R+ D+  V      A  +Y  K        I                     +GG+++   +GKI  +NT +ARL ++    LP +RK L  +
Sbjct:   40 EEFAIEKSKLVRQETDAIDSAYAKKFKQAQMSQQITRSTMANKTRLRVLGARQELLDEIFEAASAQLGQATHDLGRYKDILRDLILEGFYAMNEPELVIRARQADYDAVREAAGWASAQYKHKTDKDVKATI-----------DAENPVPEGSAGGIIIVGGNGKIDIDNTFEARLTLLKDSALPAMRKALFGE 222          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE_SCHPO (V-type proton ATPase subunit E OS=Schizosaccharomyces pombe GN=vma4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.897e-18
Identity = 58/194 (29.90%), Postives = 101/194 (52.06%), Query Frame = -2
Query:  195 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 776
            EEF +EK ++V  +   I Q Y+ K K+  + +KI  S  LN SR+++L ++  ++ ++     K++  + +  ++Y K +  LIVQ++  L EP  ++  R+ D  +V++ +  A E    K      E+  +   +L            S  GGVV+    GKI  +NTL ARL++V  + LPEIR+ L  +
Sbjct:   36 EEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFL----------NDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGE 219          
The following BLAST results are available for this feature:
BLAST of CN185313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_YEAST3.657e-2131.94V-type proton ATPase subunit E OS=Saccharomyces ce... [more]
VATE_CANAL1.390e-2029.84V-type proton ATPase subunit E OS=Candida albicans... [more]
VATE_NEUCR7.625e-1929.38V-type proton ATPase subunit E OS=Neurospora crass... [more]
VATE_SCHPO2.897e-1829.90V-type proton ATPase subunit E OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185313 ID=CN185313; Name=CN185313; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTGAGCACCAAATCCAAGAACAGATTCACTGATTTTCACCATA
AAGATATTCTGCAAACATTATAATTTAAAATATGCAAACAAACAGGAAAT
AATAAATTTTATGGTCAATAACTAAACTTAAAAACTTCGGACATGAATAA
TCAGAGGGTGACAAACAATTCAAATTAACTCATCATGCAGCAACCTGACT
GACGAGCTGCTTCCGGATCTCAGGAAGTTTTTTACGGAACACAACATCCA
ACCGTGCATCAAGGGTATTCTCACATACTATCTTCCCATCTCGAGAAGCC
ACCACGACACCTCCTGAGCAGGATGGACCATGGGCATTATGATGGCCAGG
GCCAGGCGGAAGATAGATGTGATGATCCACAATTATCTCTGGTGGGTGAA
CCTGCAATTTCTGTGCATATTCCTCTTTTGCTGACTCCAAAACAGACTCC
ACCAAATGATGGTCATCTTTGCGGCATCTCAGTAACACAGCTGGCTCTTT
CAGCCTGAGCAAACTCTGAACAATAAGACCCTTCAAAAGCTTCTTATATG
AATTGTGATCGCGACTCACATTCAAAACCTCCTTTGATGCTGCCTCCATC
ATATTACTGACCAAATCATCCTGAGCTTGAAGAACTTTGATCCGAGAAGC
ATTCAGCTGCATGGAGTACTCAATCTTCTTTCTGATTTCGACTTGCTTCT
CTTTCCGCTCGTACTCTTGTCTGATCTTCTTCTTCTCTGCTTCCACCAGC
TGCAACTTCTCTATGTTGAATTCTTCT
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