CN185310

Overview
NameCN185310
Unique NameCN185310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.533e-48
Identity = 95/179 (53.07%), Postives = 125/179 (69.83%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            TAG+VI+CKAAV WE  KP  IE++EVAPP+ +EVR+K++ T +C +D +       TPL P + GHE  GIVESVGEGVT ++PGD V+P+F+ +C EC  C   ESN C    +   RG +  +G SRFS KGK I++F+ TSTFS+YTV     VAKI+ A+PLDKVC++ CG ST
Sbjct:    3 TAGKVIKCKAAVLWELHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSGTLVTPL-PAVLGHEGAGIVESVGEGVTCVKPGDKVIPLFSPQCGECRICKHPESNFCSRSDLLMPRGTL-REGTSRFSCKGKQIHNFISTSTFSQYTVVDDIAVAKIDGASPLDKVCLIGCGFST 179          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 4.614e-48
Identity = 93/179 (51.96%), Postives = 121/179 (67.60%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            T GQVIRCKAA+ W+ G P  IEEVEVAPP+  EVR+K++ T LC T++    +K    L+P I GHE  GIVES+GEGV+ ++PGD V+ +F  +C EC  C + E N C  +     +  +++DG SRF+ KGK IYHF  TSTF EYTV     VAKI+  APL+KVC++SCG ST
Sbjct:    3 TTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFST 179          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.870e-48
Identity = 93/179 (51.96%), Postives = 120/179 (67.04%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            T GQVIRCKAA+ W+ G P  IEEVEVAPP+  EVR+K++ T LC T++    +K    L+P I GHE  GIVES+GEGV+ ++PGD V+ +F  +C EC  C + E N C  +        +++DG SRF+ KGK IYHF  TSTF EYTV     VAKI+  APL+KVC++SCG ST
Sbjct:    3 TTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSETQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFST 179          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.028e-47
Identity = 94/179 (52.51%), Postives = 124/179 (69.27%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            TAG+VI+CKAAV WE  KP  IE+VEVAPP+  EVR+K++   +C TD +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+   +C +C  C + E N C    ++  RG +  DG SRF+ +GKPI+HF+G STFS+YTV     VAKI+ A+P++KVC++ CG ST
Sbjct:    3 TAGKVIKCKAAVLWEVMKPFSIEDVEVAPPKAYEVRIKMVTVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVEPGDKVIPLALPQCGKCRICKTPERNYCLKNDVSNPRGTL-QDGTSRFTCRGKPIHHFLGVSTFSQYTVVDENAVAKIDAASPMEKVCLIGCGFST 179          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.342e-47
Identity = 95/179 (53.07%), Postives = 125/179 (69.83%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++   +C TD +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+   +C +C  C + ESN C    ++  +G +  DG SRF+ + KPI+HF+G STFS+YTV     VAKI+ A+PL+KVC++ CG ST
Sbjct:    3 TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTL-QDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 179          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.991e-47
Identity = 94/180 (52.22%), Postives = 125/180 (69.44%), Query Frame = 1
Query:   43 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            GTAG+VI+CKAAV W   +P  IEE+EVAPP+  EVR+KIL T +C TD +  +       FP I GHEA G+VESVGEGVT ++PGD V+P+F  +C+EC  C + E N+C + +  T  GV+  DG +RF+ KGKP+ HF+ TSTF+EYTV     VAK++ AAP +K C++ CG ST
Sbjct:    2 GTAGKVIKCKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKGS-MVSKFPVIVGHEAVGVVESVGEGVTTVRPGDKVIPLFLPQCRECNACLNPEGNLC-IRSDLTGCGVLA-DGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFST 178          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.906e-47
Identity = 94/179 (52.51%), Postives = 124/179 (69.27%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            TAG+VI+CKAAV W   +PL IEE+EVAPP+++EVR+KI+ T +C +D +          FP I GHEA G+VESVGEGVT  +PGD V+P+F  +C EC  C + ESN+C    I    GV++ D  SRF+ KGK I++F+ TSTF+EYTV     VAKI+  APL+KVC++ CG ST
Sbjct:    2 TAGKVIKCKAAVCWGPKQPLSIEEIEVAPPKRHEVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKVIPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLL-DKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFST 179          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.906e-47
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            TAG+VI+CKAAV WE  KP  I E+EVAPP+ +EVR+KIL + +C +D +      +   FP I GHEA G+VESVGEGVT ++PGD V+P+F  +C EC  C     N+C    +    G++  DG SRF+ +GKP+YHFV T TF+EYTV     V KI+ +APL+KVC++ CG ST
Sbjct:    2 TAGKVIKCKAAVVWEPKKPFSIVEIEVAPPKAHEVRIKILASGICRSDDHVLSGALKVN-FPIILGHEAAGVVESVGEGVTSMKPGDKVIPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLY-DGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFST 178          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 6.662e-47
Identity = 91/179 (50.84%), Postives = 126/179 (70.39%), Query Frame = 1
Query:   46 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            TAG+VI+CKAAV WE  KP  IE++EVAPP+ +EVR+K++ T +C +D +       +PL P + GHE  GIVESVGEGVT ++PGD V+P+FT +C +C  C   E N+C    +   RG ++ DG SRF+ +GK I++F+ TSTFS+YTV     VAKI+ A+PL+KVC++ CG ST
Sbjct:    3 TAGKVIKCKAAVLWEPHKPFSIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSRSLASPL-PAVLGHEGAGIVESVGEGVTSVKPGDKVIPLFTPQCGKCRICKHPEYNLCMKNDLMQPRGTLL-DGTSRFTCRGKAIHNFISTSTFSQYTVVDEMAVAKIDGASPLEKVCLIGCGFST 179          
BLAST of CN185310 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 4.318e-46
Identity = 93/184 (50.54%), Postives = 118/184 (64.13%), Query Frame = 1
Query:   31 INMSGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLTINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGIST 582
            +  S TAG++I CKAAVAW+   PL IE V+V PP+ +EVR+KI+ + +CHTD Y    K    LFP I GHE  GIVESVG  VT +Q GD V+ ++T ECK C  C S ++N+C  +     +G+M  DG SRFS  G  + HF+G STFSEYTV     V  I   APLD VC+L CGI+T
Sbjct:    1 MQQSPTAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLM-PDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITT 183          
The following BLAST results are available for this feature:
BLAST of CN185310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
ADH1_MOUSE3.533e-4853.07Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH6_HUMAN4.614e-4851.96Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH6_PONAB7.870e-4851.96Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1A_MACMU1.028e-4752.51Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADH1A_HUMAN1.342e-4753.07Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH7_MOUSE2.991e-4752.22Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH1_RANPE3.906e-4752.51Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH1B_UROHA3.906e-4750.84Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1_PERMA6.662e-4750.84Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
FADH2_SCHPO4.318e-4650.54Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185310 ID=CN185310; Name=CN185310; organism=Citrus sinensis; type=EST; length=583bp
AGGCAGGTGTTGAGAGTATCATCATTCATCATCAATATGTCTGGCACAGC
TGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATGGGAGGCGGGGAAGC
CACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCACAGAAAAATGAAGTT
CGATTGAAGATCCTCTTCACCTCTTTATGCCATACTGATGTTTACTTCTG
GGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCATTTTTGGTCACGAAG
CTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAACTGATCTCCAACCA
GGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGCAAGGAATGTCCTCA
CTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCTCACGATCAATACTG
ACAGGGGTGTTATGATTAATGATGGTCAGTCGAGATTCTCGATTAAGGGG
AAGCCAATTTACCATTTTGTGGGCACTTCTACCTTCAGTGAATACACTGT
TACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGCTGCCCCTCTTGACA
AAGTTTGTGTGCTTAGCTGTGGAATCTCCACAG
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