CN185309

Overview
NameCN185309
Unique NameCN185309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.521e-38
Identity = 77/196 (39.29%), Postives = 117/196 (59.69%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            STG GA +N AK   G + A+F             + +GASRII +D+N  +F +AK  G T+ +NP++ +KPVQ VI +MTNGGVD +++C G  + M +  +C   GWG    VGV   D      P+ L+  RTLKGT FG +   + +P +V  Y N + +++  +THT+PF +IN+A +L+  G+SIR ++
Sbjct:  183 STGYGAAINTAKVTPGSTCAVFGLGGVGLSAIMGCKTAGASRIIAIDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCATVGWGSCTFVGVNLADKGLTISPIELILGRTLKGTNFGGWDAET-VPKLVSDYKNGKFDLDALVTHTLPFDKINEALNLLDQGKSIRTVL 377          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.292e-38
Identity = 79/196 (40.31%), Postives = 115/196 (58.67%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            STG GA +N AK   G + A+F             + +GASRII VD+N  +F +AK  G T+ +NP++ +KPVQ VI +MTNGGVD +++C G  + M +  +C   GWG    VGV   D      P+ L+  RTL+G+ FG +     +P +V  Y N +  +E  +THT+PF +IN+A DL+  G+SIR I+
Sbjct:  183 STGYGAAINDAKVTPGSTCAVFGLGGVGLSAVIGCKTAGASRIIAVDINSDKFAKAKALGATDCLNPRELNKPVQDVIVEMTNGGVDFAIDCAGGSEVMKATVDCTTVGWGSCTFVGVNVNDKGLTISPVELILGRTLRGSSFGGWDV-DTVPKLVSDYKNGKFNLEALVTHTLPFEKINEALDLLKQGKSIRTIL 377          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38
Identity = 75/198 (37.88%), Postives = 121/198 (61.11%), Query Frame = -3
Query:  183 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRM 776
            STG+GA  NVA  +   +VAIF            AR  GAS+IIG+D+NP +F   ++ G++EF+NPK+ DK V + + ++T GGV+ S EC GS++A+  AF   + G GV V++GV         HPM L   R++  + FG +KP++ LP  + + +   L ++ FI+H +PF +IN+A  L+  G+++RC++ +
Sbjct:  183 STGVGAAWNVADIQPASTVAIFGLGAVGLAVAEGARARGASKIIGIDINPDKFQLGREAGISEFINPKESDKAVHERVMEITEGGVEYSFECAGSIEALREAFLSTNSGVGVTVMLGVHASPQLLPIHPMELFQGRSITASVFGGFKPKTQLPFFITQCLQGLLNLDLFISHQLPFHDINEAMQLLHQGKALRCLLHL 380          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 78/196 (39.80%), Postives = 112/196 (57.14%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            +TG GA    A  K+G SVA+F            A    A RI G+D+NP + N A  FG T+F+NP D   P+Q V+   T+GG+D + +CTG+V  M SA E  H GWG ++++GV        T P  L+  R  +G  FG  K RS LP +V++Y++ +LE++K+ITH  P  EIN+AF  M  G  I+ ++
Sbjct:  182 TTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQDVLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTVL 377          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.134e-37
Identity = 78/197 (39.59%), Postives = 115/197 (58.38%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNG-GVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            STG GA V  AK + G + A+F             + +GASRIIGVD+N  +F +AK+ G TE VNP DY KP+ +V+ D+T G GVD S E  G    M +A    H  +G +++VG+P         P  +   RT KG+ FG +K +  +P +V  +M K+  ++  ITHT+PF +IN+ F+L+ AG+SIR ++
Sbjct:  177 STGYGAAVETAKVEPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGVDINKDKFPKAKEMGATECVNPLDYKKPINEVLFDLTGGEGVDYSFEVIGRTDTMTAALASCHMDYGTSIIVGLPPSASEITFSPGLIFTGRTWKGSVFGGWKSKDSVPRLVSDFMQKKFSLDPLITHTMPFDKINEGFELLRAGKSIRSVL 373          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.787e-37
Identity = 78/203 (38.42%), Postives = 116/203 (57.14%), Query Frame = -3
Query:  180 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKP----VQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 776
            STG GA +N  K ++G +VA++            A+ +GA +I+G+DL  S+F  AK FG TE +NPK  + P     Q  + +  +GG D + EC G+V  M  A E  H GWGV+ ++GV        T P  L+  RT KGT FG +K    +P +V+ YMNK+L +++FITH     +IN AFD++  GES+R ++  +
Sbjct:  180 STGYGAVLNTCKVEEGSTVAVWGLGAVGLAVIMGAKAAGAKKIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVLAFE 382          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.787e-37
Identity = 73/196 (37.24%), Postives = 114/196 (58.16%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            STG GA V  AK   G + A+F             + +GASRIIG+D+N  +F +A   G TE +NP+D+ KP+ +V++DMT   V  + E  G ++ M+ A    H  +G +V+VG P         PM L   RT KG  FG +K R D+P +V +++ K+ ++ + ITHT+PF  I++ F+L+ +G+SIR ++
Sbjct:  177 STGYGAAVKTAKVSPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGIDINKDKFQKALDVGATECINPRDFTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVGAPPSAKMLSYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLGQLITHTLPFHNISEGFELLYSGQSIRTVL 372          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.208e-37
Identity = 73/196 (37.24%), Postives = 114/196 (58.16%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            STG GA V  AK   G +  +F             + +GASRIIG+D+N  +F +A   G TE ++PKD  KP+ +V++DMT   V  + E  G ++ M+ A    H  +G +V+VG P         PM L   RT KG  FG +K R D+P +V +++ K+ ++++ ITHT+PF+ IN+ F+L+ +G+SIR ++
Sbjct:  177 STGYGAAVKTAKVTPGSTCVVFGLGGVGLSVIMGCKAAGASRIIGIDINKDKFQKALAVGATECISPKDSTKPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTLPFNNINEGFELLYSGKSIRTVL 372          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.806e-36
Identity = 81/200 (40.50%), Postives = 116/200 (58.00%), Query Frame = -3
Query:  180 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDY-DKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 776
            STG+GA   VA  ++G ++AIF            AR+ GA++IIG+D N  +F   KKFG T+F+NP    +K + +VI +MT GGVD S EC G    +  AF     G G  V++G+            +LL  R + G+ FG  K + D+P +V+ Y+ KEL ++ FITH + F EINKAF L+  G+S+RCI+ MD
Sbjct:  188 STGIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMD 387          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.806e-36
Identity = 76/202 (37.62%), Postives = 116/202 (57.43%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTN------GGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            +TG+GA +N AK + G    +F             +++GA  IIGVDLN ++    ++FG+T FVNP + D  V   + +MT       GG D + +CTG+V+ M  A E  H GWG ++++GV       +T P  L+  R  KG+ FG  + R+D+P +V+ YM  +++++  ITH +   EINK FDLM AGESIR ++
Sbjct:  173 TTGIGAVINTAKVEIGAKAVVFGLGGIGLNVIQGLKLAGADMIIGVDLNNAKKEWGERFGMTHFVNPSEIDGDVVAHLVNMTKTPFDQIGGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVAPAGAEIQTRPFQLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKIQIDPMITHILSLEEINKGFDLMHAGESIRSVV 374          
The following BLAST results are available for this feature:
BLAST of CN185309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ADHP_RABIT2.521e-3839.29Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADHQ_RABIT3.292e-3840.31Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADHL4_ARATH5.615e-3837.88Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]
FADH2_SCHPO9.578e-3839.80Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH1A_UROHA2.134e-3739.59Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADHX_CAEEL2.787e-3738.42Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH7_RAT2.787e-3737.24Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH7_MOUSE6.208e-3737.24Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADHL1_ARATH1.806e-3640.50Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADHI_RHOS41.806e-3637.62Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185309 ID=CN185309; Name=CN185309; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTATATGTAGAAAACACAACTCTCTTGAAAGCCCT
CTTTCAGCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTA
ATATATAACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGA
TTGATCAGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCT
AATGCTTTCTCCCGCAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGA
AGGGCACAGTGTGAGTGATGAATTTCTCGACCTCCAACTCCTTGTTCATG
TATTTTTCAACAACAGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAA
GAAGGTACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCT
TGAATGCATCATCTTTGTTTGGCACACCCACAAGCACAGCAACACCCCAA
CCATCGTGAACGCATTCAAATGCTGAAATCATGGCCTGGACGCTTCCAGT
ACATTCAACACTTCTATCCACTCCACCATTGGTCATGTCAGCAATCACCT
GTTGAACAGGTTTGTCATAATCTTTTGGATTCACAAACTCGGTAACCCCA
AACTTCTTGGCTTCATTGAATCTGCTTGGGTTCAAATCAACACCAATGAT
CCTGGAAGCCCCTGATACCCTTGCCCCTTCGGCAGCAGCGAGGCCAACTG
CACCCAATCCAAAAATGGCAACAGACTGGCCCTTCTTCGGTTTGGCGACA
TTAACAGTAGCCCCCAAACCTGTGGAGA
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