CN185285

Overview
NameCN185285
Unique NameCN185285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 58/200 (29.00%), Postives = 88/200 (44.00%), Query Frame = 1
Query:  121 GWTDAHATFYXXXXXXXXXXXXXXY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG---GIRFTINGHSYFNLVLITNVGGAGDVRAVSI-----KGSRTDWQPMSRNWGQNWQSNS 672
            GW+   AT+Y              Y G++    + +  AA S +++ +G  CG+C+++KC  +P  C    + V  T+ C          GG C     HFDLS   F  +A+         AG +PV Y RVPC  +G     R     + Y+  VL+ +  G GD+ AV +      G    W  M ++WG  W+ NS
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC---------PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS 226          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 61/195 (31.28%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  121 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEG-YGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKG-GIRFTIN--GHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNS 672
            GW  A AT+Y              Y     +  + +  AA S +L+  G  CGAC+E+KC  +   C      V  T+ C          GG C     HFD+S      +A+         AGI+ V YRRVPC   G  I F ++   + ++  VLI    G GD+ AV +  +   W PM +NWG  W+ NS
Sbjct:   63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNS 247          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 52/197 (26.40%), Postives = 89/197 (45.18%), Query Frame = 1
Query:  124 WTDAHATFYXXXXXXXXXXXXXXY-GNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFT----INGHSYFNLVLITNVGGAGDVRAVSI--KGSRTDWQPMSRNWGQNWQSNS 672
            W++  AT+Y              Y G ++   + +  AA S +++ +G+ CG+C+++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A          AG++ + Y RVPC+  GG++ T    +  +  +  VL+    G GD+  V +   G+   W  M ++WG  W+ N+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCN-WGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNA 222          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 57/192 (29.69%), Postives = 86/192 (44.79%), Query Frame = 1
Query:  124 WTDAHATFYXXXXXXXXXXXXXXYGNLYS-EGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIA-------QYKAGIVPVSYRRVPCSRKG-GIRFTINGHS--YFNLVLITNVGGAGDVRAVSIK--GSRTDWQPMSRNWGQNW 660
            W  A AT+Y              YG L   +       A++  LF NG  CGAC++++C+ D   C   ++ V  T+ C             C+    HFDLS  VF ++A           G++PV YRR  C  +G  I F +N  S  ++  +L+    G GD+ ++ I+  G+R +W  M   WG NW
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCL-DKSICSRRAVTVIITDECPG-----------CSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAR-EWLEMKHVWGANW 214          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 55/201 (27.36%), Postives = 91/201 (45.27%), Query Frame = 1
Query:  112 YGQGWTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWC--RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTING--HSYFNLVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNS 672
            YG  W DA AT+Y                Y ++    + +  A  +  +F +G+ CG+CFEIKC + P  C  +P  +++T  N+                    HFDL+   F  +A+        KAGI+ + +RRV C     + F +    +  +  +L+  V G GD+ AV IK   +D ++P+  +WG  W+ +S
Sbjct:   45 YGSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEPI--------------AAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDTYEPLKHSWGAIWRKDS 230          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 57/202 (28.22%), Postives = 92/202 (45.54%), Query Frame = 1
Query:  112 YGQGWTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWC--RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTIN---GHSYFNLVLITNVGGAGDVRAVSIKGSRTD-WQPMSRNWGQNWQSNS 672
            YG+ W DA AT+Y                Y ++    + +  A  +  +F +G+ CG+CFEIKC + P  C  +P  + +T  N+                    HFDL+   F  +A+        KAGI+ + +RRV C     + F +    G +Y  L L+  V G GD+ AV +K   +D ++P+  +WG  W+ +S
Sbjct:   46 YGKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECSGKPVVVHITDMNYEPI--------------AAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDTYEPLKHSWGAIWRKDS 231          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 53/195 (27.18%), Postives = 86/195 (44.10%), Query Frame = 1
Query:  124 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEG-YGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTI-----NGHSYFNLVLITNVGGAGDVRAVSI--KGSRTDWQPMSRNWGQNWQ 663
            W++  AT+Y              Y     +  + +  AA S +++ +G+ CG+C+++KC  +   C    + V  T+ C          GG C     HFDLS   F  +A          AG++ + Y RVPC+  GG+  T      +  SYF  VL+    G GD+  + +   G+   W PM ++WG  W+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CSGNPVTVVLTDEC---------PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCN-WGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWK 219          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 58/191 (30.37%), Postives = 80/191 (41.88%), Query Frame = 1
Query:  124 WTDAHATFYXXXXXXXXXXXXXXYGNLYSE-GYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIA-------QYKAGIVPVSYRRVPCSRKG-GIRFTIN-GHSYFNLVLITNV-GGAGDVRAVSIK-GSRTDWQPMSRNWGQNW 660
            W  A AT+Y              YG L       T   A+S  LF  G  CGAC++++C+ D   C   ++ V  T+ C          GG C   + HFDLS   F ++A           G + V YRR  C   G  I F +N G + F L L+     G GD+ ++ +K  +   WQ M   WG  W
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCL-DASICSRRAVTVIVTDEC---------PGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATW 225          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 58/191 (30.37%), Postives = 82/191 (42.93%), Query Frame = 1
Query:  124 WTDAHATFYXXXXXXXXXXXXXXYGNLYSE-GYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKA-------GIVPVSYRRVPCSRKG-GIRFTIN-GHSYFNLVLITNV-GGAGDVRAVSIK-GSRTDWQPMSRNWGQNW 660
            W  A AT+Y              YG+L           ++S  LF +G  CGAC+++KC+ D   C   ++ V  T+ C          GG C   + HFDLS   F ++A   A       G + V YRR  C   G  I F +N G + F L L+     G GD+ ++ IK  +  +W  M   WG  W
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCL-DHGICSRRAVTVIVTDEC---------PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATW 228          
BLAST of CN185285 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 55/200 (27.50%), Postives = 87/200 (43.50%), Query Frame = 1
Query:  112 YGQGWTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTI-----NGHSYFNLVLITNVGGAGDVRAVSI--KGSRTDWQPMSRNWGQNWQ 663
            YG+ W +A  T+Y                Y ++    +    +  +  +F +G  CG+CFE+KC + P  C    + +  T+                     HFDLS   F  +A+        KAGI+ + +RRV C   G  + T      +  +YF  VL+  VGG GDV  V +  KGS  +W+P++ +WG  W+
Sbjct:   37 YGKQWLEARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCGNDPIFKDGKGCGSCFEVKC-SKPEACSDKPVIIHITDMNTEPI------------AAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYF-AVLVKYVGGDGDVVKVELKEKGSE-EWKPLNESWGAIWR 221          
The following BLAST results are available for this feature:
BLAST of CN185285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
EXB14_ORYSJ5.989e-1729.00Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB11_ORYSJ1.334e-1631.28Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ1.249e-1426.40Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB3_ARATH3.633e-1429.69Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXB11_MAIZE8.094e-1427.36Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXB10_MAIZE1.057e-1328.22Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXB18_ORYSJ3.076e-1327.18Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ5.246e-1330.37Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB17_ORYSJ1.526e-1230.37Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB10_ORYSJ3.401e-1227.50Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185285 ID=CN185285; Name=CN185285; organism=Citrus sinensis; type=EST; length=696bp
ATGAGAACCTCTCTTTCTCTCTTAAAAAAGATACGCAAGCAAAAGGGTTT
CAGGAACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAG
TCTCATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTAT
GGTGGGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAA
CTTATACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCGC
TTTTCAACAATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTT
AATGACCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACAAA
TTTTTGCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCA
ATCCTCCCCAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATT
GCTCAGTACAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATG
CAGTAGGAAGGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCA
ACTTAGTCCTAATCACAAACGTCGGAGGCGCTGGTGATGTGCGTGCTGTT
TCAATCAAAGGGTCAAGAACTGATTGGCAACCCATGTCAAGGAACTGGGG
TCAAAACTGGCAAAGTAACAGTTACCTCAATGGCCAAAGCCTCTCA
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