DC887747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37 Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = -3 Query: 180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539 GRGK + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ+LLP+K G + Sbjct: 3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 3.414e-37 Identity = 84/121 (69.42%), Postives = 91/121 (75.21%), Query Frame = -3 Query: 189 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539 GRGK + K+ISRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH LLP+K G Sbjct: 3 GRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAG 123
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37 Identity = 85/124 (68.55%), Postives = 89/124 (71.77%), Query Frame = -3 Query: 180 GRGKPKST----KSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539 GRGK + KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLP+K G + Sbjct: 3 GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37 Identity = 82/124 (66.13%), Postives = 91/124 (73.39%), Query Frame = -3 Query: 180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539 GRGK + K+ SRS K GLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ+LLP+K G + Sbjct: 3 GRGKAIGAGAAKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37 Identity = 83/124 (66.94%), Postives = 90/124 (72.58%), Query Frame = -3 Query: 180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539 GRGK + K+ +RS KAGLQFPVGRIARFLK GKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLP+K G + Sbjct: 3 GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 1.297e-36 Identity = 82/124 (66.13%), Postives = 91/124 (73.39%), Query Frame = -3 Query: 180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539 GRGK + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ+LLP+K + Sbjct: 3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSK 126
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3) HSP 1 Score: 150.984 bits (380), Expect = 3.774e-36 Identity = 81/136 (59.56%), Postives = 92/136 (67.65%), Query Frame = -3 Query: 153 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 560 S+G GG+ S S SRS KA L FPVGR+ R L+ G YA R+GAGAP +GNAARDNKK+RIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLPRK KG + ASQE Sbjct: 2 SSGGKSGGKAASSSKTSKSRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKSAKGAK---GASQE 134
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3) HSP 1 Score: 148.673 bits (374), Expect = 1.873e-35 Identity = 81/132 (61.36%), Postives = 94/132 (71.21%), Query Frame = -3 Query: 153 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 542 GG+GK S++ S SRS KAGL FPVGR+ R L+ G YA RVG+GAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K KG+ ASQE Sbjct: 3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSAKGK-----ASQE 129
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.446e-35 Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = -3 Query: 153 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 542 GG+GK S++ S SRS KAGL FPVGR+ R L+ G YA RVG+GAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK ASQE Sbjct: 3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSGKS----AKASQE 130
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3) HSP 1 Score: 148.288 bits (373), Expect = 2.446e-35 Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = -3 Query: 183 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKG 542 GG+GK +++ S SRS KAGL FPVGR+ R L+ G YA R+G+GAP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GKG Sbjct: 3 GGKGKAGTSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG 124 The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bpback to top |