DC887747

Overview
NameDC887747
Unique NameDC887747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = -3
Query:  180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK      + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ+LLP+K G  +
Sbjct:    3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.414e-37
Identity = 84/121 (69.42%), Postives = 91/121 (75.21%), Query Frame = -3
Query:  189 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539
            GRGK      + K+ISRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH  LLP+K G
Sbjct:    3 GRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAG 123          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37
Identity = 85/124 (68.55%), Postives = 89/124 (71.77%), Query Frame = -3
Query:  180 GRGKPKST----KSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK   +    KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP+K G  +
Sbjct:    3 GRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 82/124 (66.13%), Postives = 91/124 (73.39%), Query Frame = -3
Query:  180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK      + K+ SRS K GLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ+LLP+K G  +
Sbjct:    3 GRGKAIGAGAAKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 83/124 (66.94%), Postives = 90/124 (72.58%), Query Frame = -3
Query:  180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK      + K+ +RS KAGLQFPVGRIARFLK GKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP+K G  +
Sbjct:    3 GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.297e-36
Identity = 82/124 (66.13%), Postives = 91/124 (73.39%), Query Frame = -3
Query:  180 GRGKP----KSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 539
            GRGK      + K+ SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ+LLP+K    +
Sbjct:    3 GRGKAIGAGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSK 126          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.774e-36
Identity = 81/136 (59.56%), Postives = 92/136 (67.65%), Query Frame = -3
Query:  153 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 560
            S+G   GG+    S  S SRS KA L FPVGR+ R L+ G YA R+GAGAP                 +GNAARDNKK+RIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLPRK  KG +    ASQE
Sbjct:    2 SSGGKSGGKAASSSKTSKSRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKSAKGAK---GASQE 134          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.873e-35
Identity = 81/132 (61.36%), Postives = 94/132 (71.21%), Query Frame = -3
Query:  153 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 542
            GG+GK  S++  S SRS KAGL FPVGR+ R L+ G YA RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K  KG+     ASQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSAKGK-----ASQE 129          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.446e-35
Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = -3
Query:  153 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 542
            GG+GK  S++  S SRS KAGL FPVGR+ R L+ G YA RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK       ASQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSGKS----AKASQE 130          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.446e-35
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = -3
Query:  183 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKG 542
            GG+GK  +++  S SRS KAGL FPVGR+ R L+ G YA R+G+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GKG
Sbjct:    3 GGKGKAGTSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG 124          
The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A1_ORYSI2.614e-3766.94Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A7_WHEAT3.414e-3769.42Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A2_ARATH5.823e-3768.55Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A8_ORYSI7.605e-3766.13Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A1_ARATH7.605e-3766.94Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A4_WHEAT1.297e-3666.13Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2A_YARLI3.774e-3659.56Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A1_DEBHA1.873e-3561.36Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]
H2A1_PICST2.446e-3561.36Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A1_CANAL2.446e-3562.30Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionDC887747 EIC Citrus sinensis cDNA clone EIC0823 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bp
TTTTGTTTCCTATATTCGGCCGGANCCCAAATCCCAGTTTACACGGAGAT
AAAAGGATCACAAATAAAGAAAAAAATTGCGTAAATCAATCAATCCTGCA
TTTTTTTTTTAAGTATTCAAATTCAACAAGCAGAGAAGTTTCAGCACTAA
AATTCTTGCGAAGCAGATCCAATATCCTCCCTTCCTTTGCCCATTTTCCT
TGGCAACAGGTTCTGATGAATGTTTGGCAGAACTCCTCCATTTGCAATAG
TAACTGTGCCCAAAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGT
TGAATGTGCCTTGGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATT
TCCAGCAAGCTCCAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATA
GGTAGACGGGGGCGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTG
AGGAAGCGAGCAATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGA
TCTGGAAATTGATTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTG
ATCCTGCGGAGCTCA
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