DC887747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 8.701e-33 Identity = 78/134 (58.21%), Postives = 89/134 (66.42%), Query Frame = -3 Query: 156 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQ 557 AG KGG K KS++RS +AGLQFPVGRI R+LK G+YA RVG GAP AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP+K K S S+ Sbjct: 11 AGGRKGGPRK----KSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKSPSK 140
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3) HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32 Identity = 81/133 (60.90%), Postives = 92/133 (69.17%), Query Frame = -3 Query: 153 TKGGRGKPKS-TKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 548 + GG+GK S TKS SRS KAGLQFPVGRI R LK G YA R+G+GAP AGNAARDNKK+RIVPRH+QLAVRNDEEL+KLLG+V I+ GGVLP+I LLP K KG+ ASQE Sbjct: 2 SSGGKGKASSETKSSSRSSKAGLQFPVGRIHRLLKKGNYAQRIGSGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGSVVISQGGVLPHIMAELLPVKT-KGK---AKASQE 130
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32 Identity = 72/115 (62.61%), Postives = 84/115 (73.04%), Query Frame = -3 Query: 195 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 539 G+G +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K Sbjct: 5 GKGAKSKSKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32 Identity = 72/129 (55.81%), Postives = 88/129 (68.22%), Query Frame = -3 Query: 177 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 563 S+ G +GK S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ TIA+GGVLPNI+ LLP K K E Sbjct: 2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKKSTE 130
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 1.484e-32 Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = -3 Query: 189 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539 G+G K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLP+K G Sbjct: 5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 1.484e-32 Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = -3 Query: 189 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539 G+G K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLP+K G Sbjct: 5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_LODEL (Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2 PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.484e-32 Identity = 72/125 (57.60%), Postives = 84/125 (67.20%), Query Frame = -3 Query: 186 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 560 + G K G S SRS KAGL FPVGR+ RFL+ G YA R+G+ AP AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQNLLP+K GK Sbjct: 2 TGGKGKSGVAAVAQGASNSRSSKAGLTFPVGRVHRFLRNGNYAQRIGSSAPVYLASVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGQVTIAQGGVMPYIHQNLLPKKSGK 126
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.938e-32 Identity = 77/141 (54.61%), Postives = 90/141 (63.83%), Query Frame = -3 Query: 165 SAGSTKGGRGKPKST---------KSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 560 S G+ GG+GK + KS+SRS KAGLQFPVGRI R+LK G+YA VG GAP AGNAARDNKK RI+PRH+ LA+RNDEEL KLLG VTIA+GGVLPNI+ LLP+K + GS Sbjct: 3 STGTGAGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGS 143
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 1.938e-32 Identity = 72/129 (55.81%), Postives = 88/129 (68.22%), Query Frame = -3 Query: 177 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 563 S+ G +GK S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ TIA+GGVLPNI+ LLP K K E Sbjct: 2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKKTSE 130
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3) HSP 1 Score: 138.272 bits (347), Expect = 2.532e-32 Identity = 73/133 (54.89%), Postives = 88/133 (66.17%), Query Frame = -3 Query: 153 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 551 S +G G K+ +RS +AGLQFPVGR+ R L+ G YA+RVGAGAP AGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K G+ G + ++ Sbjct: 2 SGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSGKSGKK 134 The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bpback to top |