DC887747

Overview
NameDC887747
Unique NameDC887747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.701e-33
Identity = 78/134 (58.21%), Postives = 89/134 (66.42%), Query Frame = -3
Query:  156 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQ 557
            AG  KGG  K    KS++RS +AGLQFPVGRI R+LK G+YA RVG GAP                 AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP+K  K      S S+
Sbjct:   11 AGGRKGGPRK----KSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKSPSK 140          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32
Identity = 81/133 (60.90%), Postives = 92/133 (69.17%), Query Frame = -3
Query:  153 TKGGRGKPKS-TKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 548
            + GG+GK  S TKS SRS KAGLQFPVGRI R LK G YA R+G+GAP                 AGNAARDNKK+RIVPRH+QLAVRNDEEL+KLLG+V I+ GGVLP+I   LLP K  KG+     ASQE
Sbjct:    2 SSGGKGKASSETKSSSRSSKAGLQFPVGRIHRLLKKGNYAQRIGSGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGSVVISQGGVLPHIMAELLPVKT-KGK---AKASQE 130          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32
Identity = 72/115 (62.61%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  195 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 539
            G+G    +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K
Sbjct:    5 GKGAKSKSKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32
Identity = 72/129 (55.81%), Postives = 88/129 (68.22%), Query Frame = -3
Query:  177 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 563
            S+ G     +GK  S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP                 AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+   TIA+GGVLPNI+  LLP K  K  E
Sbjct:    2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKKSTE 130          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.484e-32
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = -3
Query:  189 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539
            G+G     K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLP+K G
Sbjct:    5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.484e-32
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = -3
Query:  189 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG 539
            G+G     K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLP+K G
Sbjct:    5 GKGAKAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A2_LODEL (Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.484e-32
Identity = 72/125 (57.60%), Postives = 84/125 (67.20%), Query Frame = -3
Query:  186 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 560
            + G  K G        S SRS KAGL FPVGR+ RFL+ G YA R+G+ AP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQNLLP+K GK
Sbjct:    2 TGGKGKSGVAAVAQGASNSRSSKAGLTFPVGRVHRFLRNGNYAQRIGSSAPVYLASVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGQVTIAQGGVMPYIHQNLLPKKSGK 126          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.938e-32
Identity = 77/141 (54.61%), Postives = 90/141 (63.83%), Query Frame = -3
Query:  165 SAGSTKGGRGKPKST---------KSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGS 560
            S G+  GG+GK  +          KS+SRS KAGLQFPVGRI R+LK G+YA  VG GAP                 AGNAARDNKK RI+PRH+ LA+RNDEEL KLLG VTIA+GGVLPNI+  LLP+K  +     GS
Sbjct:    3 STGTGAGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGS 143          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.938e-32
Identity = 72/129 (55.81%), Postives = 88/129 (68.22%), Query Frame = -3
Query:  177 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 563
            S+ G     +GK  S+K +SRS +AGLQFPVGRI+RFLK G+Y++R+G GAP                 AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+   TIA+GGVLPNI+  LLP K  K  E
Sbjct:    2 STTGKGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTKKTSE 130          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 2.532e-32
Identity = 73/133 (54.89%), Postives = 88/133 (66.17%), Query Frame = -3
Query:  153 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQE 551
            S +G  G     K+ +RS +AGLQFPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K G+     G + ++
Sbjct:    2 SGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSGKSGKK 134          
The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A1_MEDTR8.701e-3358.21Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A_CRYNE1.136e-3260.90Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=... [more]
H2A4_PSAMI1.136e-3262.61Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A1_TETTH1.136e-3255.81Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A_PARAN1.484e-3261.54Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A3_PSAMI1.484e-3261.54Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2A2_LODEL1.484e-3257.60Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2... [more]
H2A_MAIZE1.938e-3254.61Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A1_TETPY1.938e-3255.81Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2AX_DANRE2.532e-3254.89Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC887747 EIC Citrus sinensis cDNA clone EIC0823 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bp
TTTTGTTTCCTATATTCGGCCGGANCCCAAATCCCAGTTTACACGGAGAT
AAAAGGATCACAAATAAAGAAAAAAATTGCGTAAATCAATCAATCCTGCA
TTTTTTTTTTAAGTATTCAAATTCAACAAGCAGAGAAGTTTCAGCACTAA
AATTCTTGCGAAGCAGATCCAATATCCTCCCTTCCTTTGCCCATTTTCCT
TGGCAACAGGTTCTGATGAATGTTTGGCAGAACTCCTCCATTTGCAATAG
TAACTGTGCCCAAAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGT
TGAATGTGCCTTGGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATT
TCCAGCAAGCTCCAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATA
GGTAGACGGGGGCGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTG
AGGAAGCGAGCAATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGA
TCTGGAAATTGATTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTG
ATCCTGCGGAGCTCA
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