CN185235

Overview
NameCN185235
Unique NameCN185235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:280..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.745e-47
Identity = 69/98 (70.41%), Postives = 83/98 (84.69%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP+FDKK FV YMK++IK   PKLG E++E+FK NI+GATK+LLSKLSDLQFFVGE + D+  +VFA +K+G TDPTFLY+A  LKEVKC
Sbjct:   71 VDTFRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTFLYLAHGLKEVKC 168          

HSP 2 Score: 64.3142 bits (155), Expect = 4.745e-47
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            L SD F Y E+ NG+LWEV+GKW VQGAVDV++GANPS              +KVVD+
Sbjct:   13 LPSDSFSYTELGNGVLWEVQGKWVVQGAVDVNIGANPSAEGADEDEGVDDQAIKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.050e-46
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VD FRLQEQP FDKK F+ ++K++IKL  PKL  E+QE FKKNIEGATK+LL KL DLQFFVGE + D+G LVFA +K+G  DPTFLY + ALKE+KC
Sbjct:   70 VDVFRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          

HSP 2 Score: 71.633 bits (174), Expect = 1.050e-46
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = -3
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            LLSD +PYKEIENG+LWEVEGKW V+GAVDV++GANPS
Sbjct:   13 LLSDSYPYKEIENGMLWEVEGKWVVKGAVDVNIGANPS 50          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.326e-46
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VD FRLQEQPAFDKK F+ ++KR+IKL  PKL  E+QE+FKK+IEGATK+LL KL DLQFFVGE + D+G LVFA +K+G  DPTFLY A ALKE+KC
Sbjct:   70 VDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          

HSP 2 Score: 65.855 bits (159), Expect = 2.326e-46
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = -3
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            LLSD +PYKEIENG+LWEVEGKW  +G V+VD+GAN S
Sbjct:   13 LLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANAS 50          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.326e-46
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQPAFDKK F+++MKR+IK    KL  +  ++FKKN+E ATK+LLSKL DLQFFVGE + D+G +VFA +KEG  DPTFLY A  LKEVKC
Sbjct:   71 VDTFRLQEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTFLYFAHGLKEVKC 168          

HSP 2 Score: 73.559 bits (179), Expect = 2.326e-46
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPY+E+ENG+LWEV+G W VQGAVDVD+GANPS              VKVVD+
Sbjct:   13 LLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.326e-46
Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQPAFDKK F+ Y+KR+IK    KL  E  + FKKN+E ATK+LLSKL DLQFFVGE + D+G +VFA ++EG  DPTFLY A  LKEVKC
Sbjct:   71 VDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168          

HSP 2 Score: 73.559 bits (179), Expect = 2.326e-46
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPY+E+ENG+LWEV+G W VQGAVDVD+GANPS              VKVVD+
Sbjct:   13 LLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.031e-46
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP +DKK F+ Y+K++IKL  PKL  E+QE FKK IEGATKFLL KL D QFFVGE + D+  +VFA +KEG T+PTFLY A  LKEVKC
Sbjct:   71 VDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTFLYFAHGLKEVKC 168          

HSP 2 Score: 70.8626 bits (172), Expect = 3.031e-46
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKEIENGILWEVEGKW  +G V+V++GANPS               KVVD+
Sbjct:   13 LLSDSFPYKEIENGILWEVEGKWTTKGCVEVNIGANPSAEEGGEDEGVDDSVEKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.611e-44
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP+ DKK F++ +K++IK   P L  E+QE FK  IEGA K+LL K+ DLQFFVGE + D+  +VFA +KEG TDPTFLY+A  LKEVKC
Sbjct:   71 VDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168          

HSP 2 Score: 75.8702 bits (185), Expect = 1.611e-44
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKEIENG++WEVEGKW V+GAVDVD+GANPS              VKVVD+
Sbjct:   13 LLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.109e-42
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP FDKK FV+Y+K++IK     L  E+ + FKK +EGATKFLLSKL DLQFFVGE + D+  + FA +K+G T+ TFLY +  LKE+KC
Sbjct:   70 VDTFRLQEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTFLYFSHGLKEIKC 167          

HSP 2 Score: 69.707 bits (169), Expect = 7.109e-42
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = -3
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            LLSD F YKE+ENG+LWEVEGKW  QG VDVD+GANPS
Sbjct:   13 LLSDSFTYKELENGVLWEVEGKWVTQGPVDVDIGANPS 50          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_CRYNE (Translationally-controlled tumor protein homolog OS=Cryptococcus neoformans GN=CNM01460 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.135e-12
Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = -1
Query:    9 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVK 299
            V +FRLQ   +FDKK ++TY+K ++K    KL E   +R   F+K  +   K +++   D +F++GE +  +G +    ++E G  P F    + LKE+K
Sbjct:   68 VHSFRLQST-SFDKKSYLTYLKGYMKAIKSKLQESNPDRVAAFEKGAQDFAKKIVANFKDYEFYIGESMNPDGMVCLLNYREDGVTPYFTMWKDGLKEIK 166          

HSP 2 Score: 31.187 bits (69), Expect = 3.135e-12
Identity = 17/38 (44.74%), Postives = 24/38 (63.16%), Query Frame = -3
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            ++SD FP KEI + I +EV+    +    DVD+G NPS
Sbjct:   13 MISDAFPIKEIGD-IAYEVDCANIIIKEGDVDIGGNPS 49          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_GIBZE (Translationally-controlled tumor protein homolog OS=Gibberella zeae GN=FG02523 PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.950e-11
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = -1
Query:    9 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGE--ERQEIFKKNIEGATKF----LLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVK 299
            V++FRLQ    FDKK ++ Y+K ++K    KL E     E  K    GA+KF    ++ K  D +F+ GE +  +G +V   ++E G  P  ++    LKE K
Sbjct:   68 VNSFRLQST-TFDKKSYLAYLKGYMKAIKAKLQENGSSAEDIKAFETGASKFVKDTIVPKFKDFEFYTGESMDPDGMVVLLNYREDGVTPYTIFWKHGLKETK 169          

HSP 2 Score: 33.4982 bits (75), Expect = 1.950e-11
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = -3
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            L+SD +  KE++ GI++E +     +GAV+V++GAN S
Sbjct:   13 LISDSYDLKEVD-GIVYEADCAMIEEGAVEVNIGANAS 49          
The following BLAST results are available for this feature:
BLAST of CN185235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TCTP_TOBAC4.745e-4770.41Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA1.050e-4667.35Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA2.326e-4669.39Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT2.326e-4666.33Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU2.326e-4666.33Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL3.031e-4667.35Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME1.611e-4462.24Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE7.109e-4260.20Translationally-controlled tumor protein homolog O... [more]
TCTP_CRYNE3.135e-1233.00Translationally-controlled tumor protein homolog O... [more]
TCTP_GIBZE1.950e-1133.98Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185235 ID=CN185235; Name=CN185235; organism=Citrus sinensis; type=EST; length=476bp
GCTTAGCACTTCACCTCCTTCAAAGCTTCCGCCATATACAAAAATGTTGG
GTCGGTCCCACCTTCCTTGTGCTAAGCAAAGACAAGACAGCCTTCATCAG
GCAAGCGCTCCCCGACAAAGAATTGAAGGTCACTGAGCTTCGAGAGCAAG
AACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGCCTCTCCTC
ACCCAGCTTGGGGGGCGGCAACTTGATGAATCTCTTCATGTATGTTACAA
ACGGCTTCTTGTCAAAAGCGGGTTGCTCCTGTAGCCTGAATGTGTCGACG
CATGTCAACCACCTTCACGGCTTGGTCATCAACACCCTCATCCTCATCAG
CTCCTTCGGCAGAGGGATTTGCCCCCATGTCAACATCAACGGCTCCTTGG
ACAAACCACTTTCCCTCCACTTCCCACAGAATCCCATTCTCAATTTCCTT
GTAGGGAAAACAATCGGAGAGAAGCT
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