CN185235

Overview
NameCN185235
Unique NameCN185235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:280..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_KLULA (Translationally-controlled tumor protein homolog OS=Kluyveromyces lactis GN=KLLA0C12716g PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.292e-11
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = -1 
Query:    9 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQE---IFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVK 299
            V +FRLQ Q AFDKK F+TY+K ++K    +L E   +   +F+K  +   K ++    D +FF GE +  +G LV   ++E GT P        +K  K
Sbjct:   68 VHSFRLQ-QTAFDKKSFLTYIKGYMKEIKGRLQESNPDEVSVFEKGAQAYVKKVIGSFKDWEFFTGESMDPDGMLVLLNYREDGTTPFVAIWKHGVKAEK 166

HSP 2 Score: 29.6462 bits (65), Expect = 3.292e-11
Identity = 14/38 (36.84%), Postives = 24/38 (63.16%), Query Frame = -3 
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            LLSD +  K ++ G+++E +      G  ++D+GANPS
Sbjct:   13 LLSDAYDLKLVD-GVIYEADCDMVKVGGDNIDIGANPS 49
The following BLAST results are available for this feature:
BLAST of CN185235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TCTP_KLULA3.292e-1135.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185235 ID=CN185235; Name=CN185235; organism=Citrus sinensis; type=EST; length=476bp
GCTTAGCACTTCACCTCCTTCAAAGCTTCCGCCATATACAAAAATGTTGG
GTCGGTCCCACCTTCCTTGTGCTAAGCAAAGACAAGACAGCCTTCATCAG
GCAAGCGCTCCCCGACAAAGAATTGAAGGTCACTGAGCTTCGAGAGCAAG
AACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGCCTCTCCTC
ACCCAGCTTGGGGGGCGGCAACTTGATGAATCTCTTCATGTATGTTACAA
ACGGCTTCTTGTCAAAAGCGGGTTGCTCCTGTAGCCTGAATGTGTCGACG
CATGTCAACCACCTTCACGGCTTGGTCATCAACACCCTCATCCTCATCAG
CTCCTTCGGCAGAGGGATTTGCCCCCATGTCAACATCAACGGCTCCTTGG
ACAAACCACTTTCCCTCCACTTCCCACAGAATCCCATTCTCAATTTCCTT
GTAGGGAAAACAATCGGAGAGAAGCT
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