CN185231

Overview
NameCN185231
Unique NameCN185231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:269..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_YARLI (Nucleolar protein 58 OS=Yarrowia lipolytica GN=NOP58 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            I++ Y   FPE+  +V   I YARV+K +G   + +  DL  +LP  +   + V A  + G  + E   +                     ++ +RM+ IAPNL+A+VG  V A+L+  +G L  LAK PA  VQ+LGA+K
Sbjct:  184 IKEWYGWHFPEMAKIVADNIAYARVIKTMGYRSNASETDLSEVLPEEVEAALKVAAEVSMGTEITEFDLENIQCLADQVIDFAEYREQLSNYLNARMAAIAPNLTALVGELVGARLIAHSGSLVNLAKAPASTVQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_BOTFB (Nucleolar protein 58 OS=Botryotinia fuckeliana (strain B05.10) GN=nop58 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 43/141 (30.50%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPE+  +V+  + YARV+ K+G  ++ +  DL  +LP  I   +   A  + G  + ++                        ++ +RM  IAPNL+ +VG  V A+L+  AG L  LAK PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPEMGKIVNDNLAYARVILKVGMRVNTSSTDLADILPEEIETAIKAAAEVSMGTEITQEDLDNIKLLAEQVVGFTEYRQQLSSYLSARMQAIAPNLTELVGDLVGARLIAHAGSLMNLAKSPASTIQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: Y694_METJA (Uncharacterized NOP5 family protein MJ0694 OS=Methanocaldococcus jannaschii GN=MJ0694 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +R+ Y L FPEL+ LV+    YA ++ K+G   + T   L+ +LPS +   ++  A  + G  L +      +                  ++E  M+  APN++ + G ++ A+L+G AGGL  LAKMPA  +Q+LGA+K
Sbjct:  147 LREWYSLYFPELDHLVNKHEVYANLITKLGKRKNFTKSQLKKILPSKLAGKIAEAAKNSMGGELEDYDLDVIVKFAEEINHLYEKRKELYNYLEKLMNEEAPNITKLAGVSLGARLIGLAGGLEKLAKMPASTIQVLGAEK 287          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_LODEL (Nucleolar protein 58 OS=Lodderomyces elongisporus GN=NOP58 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  ++   + YAR++  +G   + + VDL  +LP  I   V   A  + G  + E+  +                     ++ SRM  IAPNL+A+VG  V A+ +  AG L++LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKMITDSVAYARIILTMGVRSNASEVDLSEILPEEIEEQVKTAAEVSMGTEITENDLENIKALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTAMVGDLVGARFIAHAGSLTSLAKAPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_ASPCL (Nucleolar protein 58 OS=Aspergillus clavatus GN=nop58 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  I YAR+V K+G   +    DL  +LP  +   V   A  + G  + +D  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILNDNIAYARLVLKMGMRSNWETSDLAEILPEELEGPVKAAADRSMGTEISQDDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTIQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_NEUCR (Nucleolar protein 58 OS=Neurospora crassa GN=nop-58 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 43/141 (30.50%), Postives = 70/141 (49.65%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  ++   + YAR++  +G   + T  DL  +LP  I   V   A  + G  + E+  Q                     ++E+RM  IAPN++ +VG+ V A+L+  AG +  LAK P   +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILPDNLSYARIIVTMGMRSNATTADLSEILPHEIEAAVKAAADISMGTEVSEEDLQNIKYLAERVIDYSVYRKQLSDYLENRMRAIAPNMTELVGALVGARLIAHAGSVMNLAKNPGSTIQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_ASPFU (Nucleolar protein 58 OS=Aspergillus fumigatus GN=nop58 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 43/141 (30.50%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  I YA++V K+G   +    DL  +LP  +   V   A  + G  + ++  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILNDNIAYAKLVLKMGMRSNWETADLTEILPEELEATVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_AJECN (Nucleolar protein 58 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  I Y++VV K+G   +    DL  +LP  I  VV   A  + G  +  +                        ++ +RM+ IAPNL+A+VG  V A+L+  AG L  L+K PA  +Q+LGA+K
Sbjct:  185 VKEWYGWHFPELAKILNDNIAYSKVVLKVGMRSNFGETDLAEILPEEIEAVVKAAADRSMGTEISNEDLDNIQALAEEVIGFSTYRQQLASYLAARMTAIAPNLTALVGELVGARLIAHAGSLVNLSKSPASTIQILGAEK 325          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_ASPTN (Nucleolar protein 58 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nop58 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.177e-14
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  I YA++V K+G   +    DL  +LP  I   V   A  + G  + ++  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILNDNIAYAKLVLKMGMRSNFESADLAEILPEEIEGAVKAAADRSMGTEISQEDLENIQALAEQVVGFSEYRQQLASYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTLQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_NEOFI (Nucleolar protein 58 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=nop58 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 43/141 (30.50%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  I YA++V K+G   +    DL  +LP  +   V   A  + G  + ++  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILNDNIAYAKLVLKMGMRSNWETADLAEILPEELEGTVKAAADRSMGTEISQEDLENIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTIQILGAEK 326          
The following BLAST results are available for this feature:
BLAST of CN185231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NOP58_YARLI7.988e-1533.33Nucleolar protein 58 OS=Yarrowia lipolytica GN=NOP... [more]
NOP58_BOTFB7.988e-1530.50Nucleolar protein 58 OS=Botryotinia fuckeliana (st... [more]
Y694_METJA1.043e-1431.91Uncharacterized NOP5 family protein MJ0694 OS=Meth... [more]
NOP58_LODEL1.043e-1432.14Nucleolar protein 58 OS=Lodderomyces elongisporus ... [more]
NOP58_ASPCL3.035e-1431.91Nucleolar protein 58 OS=Aspergillus clavatus GN=no... [more]
NOP58_NEUCR3.964e-1430.50Nucleolar protein 58 OS=Neurospora crassa GN=nop-5... [more]
NOP58_ASPFU3.964e-1430.50Nucleolar protein 58 OS=Aspergillus fumigatus GN=n... [more]
NOP58_AJECN3.964e-1431.91Nucleolar protein 58 OS=Ajellomyces capsulata (str... [more]
NOP58_ASPTN5.177e-1431.21Nucleolar protein 58 OS=Aspergillus terreus (strai... [more]
NOP58_NEOFI6.762e-1430.50Nucleolar protein 58 OS=Neosartorya fischeri (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001A09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185231 ID=CN185231; Name=CN185231; organism=Citrus sinensis; type=EST; length=637bp
TGAGTAATGTTTCAAAATTGCATAAATGTCATAGATTCACTGTTATAATG
CAGAAAGTTGAAGCTGCACTCCAGAACGGTCCTTATATATCTAATCATGG
AATGGTATTGGAGGATGATCCAGAGTATCAGCTAATTGTCGATTGTAATG
TTCCATAAATTGACATATAGAATGAGATTGTGATTATTCATAATTTCATT
CGCGACAAGTACAGACTGAAATTTCCAGAGCTTGAATCTTTAGTCCATCA
CCCCATTGATTATGCCCGTGTTGTGAAAAAGATCGGCAACGAAATGGATT
TGACGCTTGTGGATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTG
GTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGT
GTTTCAAAGGACAATTGATGCATGTGATCGAGCTCTTGCACTTGATGCAG
CAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCG
CCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGG
AACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTC
AGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTT
back to top