CN185231

Overview
NameCN185231
Unique NameCN185231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:269..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_ASPNC (Nucleolar protein 58 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=nop58 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  I YAR+V K+G   +    DL  +LP  I   V   A  + G  + ++  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILNDNIAYARLVLKMGMRTNWESSDLAEILPEEIEGAVKAAADRSMGTEISQEDLEHIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTLQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_USTMA (Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.506e-13
Identity = 42/141 (29.79%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPE+  ++   + YA+V++ +G   + +  D   +LP  I   +   A  + G  + E   +                     ++++RM+ IAPNL+A+VG  V A+L+  AG L  LAK PA  VQ+LGA+K
Sbjct:  194 VKEWYGWHFPEMGKIITDNLAYAKVIRAMGFRTNASATDFSEILPEEIEETLKAAAEISMGTEISETDLEHIWSLCDQVISITQYRTQLYQYLQNRMAAIAPNLTALVGDLVGARLISHAGSLMNLAKHPASTVQILGAEK 334          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_COCIM (Nucleolar protein 58 OS=Coccidioides immitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPE+  +++  + YA+VV K+G   +    DL  +LP  I   V   A+ + G  +  +  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L  L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPEMAKILNDNMAYAKVVLKMGMRSNSDSADLSEILPEEIEGAVKAAANRSMGTDISNEDLENIQCLAEQVVGFAEYRQQLASYLTARMTAIAPNLTALVGELVGARLIAHAGSLVNLSKSPASTIQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_DICDI (Nucleolar protein 58 OS=Dictyostelium discoideum GN=nop58 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 44/140 (31.43%), Postives = 64/140 (45.71%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            R+ Y   FPEL  L+ +   YA  +K +GN       D   +LP  +   V   A  + G  +  +                        +++SRM  IAPNL+ +VG  V A+L+  AG L  LAK PA  +Q+LGA+K
Sbjct:  186 REWYGWHFPELGKLITNHTQYANAIKAMGNRKSAVDTDFTDILPEEVAEEVKEAAQISMGTEISPEDLDHIFALCDQFLSIQAYHTELTEYLKSRMEAIAPNLTILVGEIVGARLICRAGSLMNLAKYPASTIQILGAEK 325          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_ASPOR (Nucleolar protein 58 OS=Aspergillus oryzae GN=nop58 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 43/141 (30.50%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  + YA++V K+G   +    DL  +LP  +   V   A  + G  + E+  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILNDNLAYAKLVLKMGMRTNWESSDLAEILPEELEGSVKAAADRSMGTEISEEDLENIQALAEQVVGFTEYRQQLAGYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTLQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_PICST (Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  ++   + YAR++  +G   + +  DL  +LP  +   V   A  + G  +     +                     ++ SRM  IAPNL+A+VG  V A+L+  AG L++LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKMIVDSVAYARIILTMGVRSNASETDLSEILPEELEEQVKSAAEVSMGTEITAIDLENIRALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTALVGELVGARLIAHAGSLTSLAKAPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_DEBHA (Nucleolar protein 58 OS=Debaryomyces hansenii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  ++   + YAR++  +G   +    DL  +LP      V   A  + G  + +   +                     ++ SRM  IAPNL+A+VG  V A+L+  +G L++LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKMITDSVAYARIILTMGIRSNAADTDLSEILPEEAEEQVKSAAEVSMGTEITDIDLENIKALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTALVGELVGARLIAHSGSLTSLAKAPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_CRYNE (Nucleolar protein 58 OS=Cryptococcus neoformans GN=NOP58 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 44/141 (31.21%), Postives = 67/141 (47.52%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPE+  ++   I +ARVVK +G   +    D   LLP  +   +   A  + G  + +                         ++ +RM  IAPNL+A+VG  V A+L+  AG L  LAK PA  VQ+LGA+K
Sbjct:  194 VKEWYGWHFPEMAKIIVDNIAFARVVKAMGFRTNAVTTDFSLLLPEDLEATLKSAAELSMGTEISDSDMTHIHSLCDQVISISEYRTQLSEYLRNRMQAIAPNLTALVGELVGARLISHAGSLMNLAKHPASTVQILGAEK 334          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_VANPO (Nucleolar protein 58 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 43/140 (30.71%), Postives = 65/140 (46.43%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  +V   + YAR++  +G        DL  +LP  +   V   A  + G  + E                         ++ SRM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKIVTDSVAYARIILAMGVRSKCADTDLSEILPEEVEERVKTAAEVSMGTEITETDLDNIKALADQIVDFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_PICGU (Nucleolar protein 58 OS=Pichia guilliermondii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 40/140 (28.57%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  ++   + YAR++  +G   + +  DL  +LP  +   V   A  + G  +     +                     ++ +RM  IAPNL+A+VG  + A+L+  AG L++L+K PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKMITDSVAYARIILTMGIRSNASETDLSEILPEEMEEKVKTAAEVSMGTEITPIDLENIKALAEQIVDFAAYREQLSNYLSARMKAIAPNLTALVGELIGARLIAHAGSLTSLSKAPASTIQILGAEK 324          
The following BLAST results are available for this feature:
BLAST of CN185231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NOP58_ASPNC6.762e-1431.91Nucleolar protein 58 OS=Aspergillus niger (strain ... [more]
NOP58_USTMA1.506e-1329.79Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 P... [more]
NOP58_COCIM1.967e-1330.50Nucleolar protein 58 OS=Coccidioides immitis GN=NO... [more]
NOP58_DICDI2.570e-1331.43Nucleolar protein 58 OS=Dictyostelium discoideum G... [more]
NOP58_ASPOR3.356e-1330.50Nucleolar protein 58 OS=Aspergillus oryzae GN=nop5... [more]
NOP58_PICST4.383e-1330.71Nucleolar protein 58 OS=Pichia stipitis GN=NOP58 P... [more]
NOP58_DEBHA1.275e-1230.00Nucleolar protein 58 OS=Debaryomyces hansenii GN=N... [more]
NOP58_CRYNE1.275e-1231.21Nucleolar protein 58 OS=Cryptococcus neoformans GN... [more]
NOP58_VANPO1.666e-1230.71Nucleolar protein 58 OS=Vanderwaltozyma polyspora ... [more]
NOP58_PICGU1.666e-1228.57Nucleolar protein 58 OS=Pichia guilliermondii GN=N... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185231 ID=CN185231; Name=CN185231; organism=Citrus sinensis; type=EST; length=637bp
TGAGTAATGTTTCAAAATTGCATAAATGTCATAGATTCACTGTTATAATG
CAGAAAGTTGAAGCTGCACTCCAGAACGGTCCTTATATATCTAATCATGG
AATGGTATTGGAGGATGATCCAGAGTATCAGCTAATTGTCGATTGTAATG
TTCCATAAATTGACATATAGAATGAGATTGTGATTATTCATAATTTCATT
CGCGACAAGTACAGACTGAAATTTCCAGAGCTTGAATCTTTAGTCCATCA
CCCCATTGATTATGCCCGTGTTGTGAAAAAGATCGGCAACGAAATGGATT
TGACGCTTGTGGATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTG
GTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGT
GTTTCAAAGGACAATTGATGCATGTGATCGAGCTCTTGCACTTGATGCAG
CAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCG
CCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGG
AACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTC
AGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTT
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