CN185231

Overview
NameCN185231
Unique NameCN185231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:269..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: PRP31_YEAST (Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae GN=PRP31 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 45/154 (29.22%), Postives = 77/154 (50.00%), Query Frame = 3
Query:  189 HNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNE------MDLTLVDLEGL--LPSAIIMVVSVTASTTSGKPLPEDVFQRT--IXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            HNF+   Y  +FPEL SL+  P+ Y++V+  + NE       D     LE    L    I+V++++  T+     P D+  RT  +                  ++ S++S IAPN+  +VG  +AA+L+  AGG+   +++P+CN+  +G  K
Sbjct:  113 HNFLISLYSRRFPELSSLIPSPLQYSKVISILENENYSKNESDELFFHLENKAKLTREQILVLTMSMKTSFKNKEPLDIKTRTQILEANSILENLWKLQEDIGQYIASKISIIAPNVCFLVGPEIAAQLIAHAGGVLEFSRIPSCNIASIGKNK 266          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_YEAST (Nucleolar protein 58 OS=Saccharomyces cerevisiae GN=NOP58 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  +V   + YAR++  +G     +  DL  +LP  I   V   A  + G  + +                         ++ +RM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKIVTDSVAYARIILTMGIRSKASETDLSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_YEAS7 (Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  +V   + YAR++  +G     +  DL  +LP  I   V   A  + G  + +                         ++ +RM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKIVTDSVAYARIILTMGIRSKASETDLSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 44/141 (31.21%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +R+ +   FPEL  +V   I YA+ VK +GN ++   +D   +L   I   +   A  + G  + +                         +++SRM+ IAPNL+A+VG  V A+L+   G L  LAK P   VQ+LGA+K
Sbjct:  181 VREWFGWHFPELAKIVQDNILYAKAVKLMGNRINAAKLDFSEILADEIEAELKEAAVISMGTEVSDLDLLHIRELCDQVLSLAEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEK 321          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_MACFA (Nucleolar protein 58 OS=Macaca fascicularis GN=NOP58 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 41/140 (29.29%), Postives = 67/140 (47.86%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            R+ Y   FPEL  ++   + Y + ++K+G+  +     L  LLP  +   V   A  + G  + E+     +                  ++++RM  IAPN++ +VG  V A+L+  AG L  LAK  A  VQ+LGA+K
Sbjct:  184 REWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEK 323          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_HUMAN (Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 41/140 (29.29%), Postives = 67/140 (47.86%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            R+ Y   FPEL  ++   + Y + ++K+G+  +     L  LLP  +   V   A  + G  + E+     +                  ++++RM  IAPN++ +VG  V A+L+  AG L  LAK  A  VQ+LGA+K
Sbjct:  184 REWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEK 323          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_ASHGO (Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  +V   + +AR++  +G   +    D+  +LP  I   V   A  + G  + +                         ++ SRM  IAPNL+ +VG  V A+L+  AG L +LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKIVTDSVAFARIILTMGVRSNAAETDMSEILPEEIEERVKSAAEVSMGTEITQVDLDNIKSLAEQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHAGSLVSLAKAPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_KLULA (Nucleolar protein 58 OS=Kluyveromyces lactis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  +V   + YAR++  +G  ++    D+  +LP  I   V   A  + G  +                           ++ SRM  IAPNL+ +VG  V A+L+  +G L +LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKIVTDSVAYARIILTMGIRVNAAETDMSEILPEEIEERVKTAAEVSMGTEITPVDLINIKCLAEQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_CANGA (Nucleolar protein 58 OS=Candida glabrata GN=NOP58 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.080e-11
Identity = 43/140 (30.71%), Postives = 65/140 (46.43%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  +V   + YAR++  +G        D+  +LP  I   V   A  + G  + +                         ++ SRM  IAPNL+ +VG  V A+L+  AG L +LAK PA  +Q+LGA+K
Sbjct:  185 KEWYGWHFPELAKIVTDSVAYARLILTMGVRSKAAETDMSEILPEEIEERVKAAAEVSMGTEITDVDLINIRALADQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHAGSLISLAKSPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 43/141 (30.50%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +R+ Y   FPEL  ++   I YA+ VK +GN ++   +D   +L   I   +   A  + G  + +                         +++SRM+ IAPNL+A+VG  V A+L+   G L  L+K P   VQ+LGA+K
Sbjct:  182 VREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAKLDFSEILADEIEADLKDAAVISMGTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILGAEK 322          
The following BLAST results are available for this feature:
BLAST of CN185231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PRP31_YEAST3.710e-1229.22Pre-mRNA-processing factor 31 OS=Saccharomyces cer... [more]
NOP58_YEAST3.710e-1230.00Nucleolar protein 58 OS=Saccharomyces cerevisiae G... [more]
NOP58_YEAS73.710e-1230.00Nucleolar protein 58 OS=Saccharomyces cerevisiae (... [more]
NOP5A_ARATH8.266e-1231.21Probable nucleolar protein 5-1 OS=Arabidopsis thal... [more]
NOP58_MACFA8.266e-1229.29Nucleolar protein 58 OS=Macaca fascicularis GN=NOP... [more]
NOP58_HUMAN8.266e-1229.29Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1... [more]
NOP58_ASHGO8.266e-1230.00Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 P... [more]
NOP58_KLULA1.080e-1130.00Nucleolar protein 58 OS=Kluyveromyces lactis GN=NO... [more]
NOP58_CANGA1.080e-1130.71Nucleolar protein 58 OS=Candida glabrata GN=NOP58 ... [more]
NOP5B_ARATH3.141e-1130.50Probable nucleolar protein 5-2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185231 ID=CN185231; Name=CN185231; organism=Citrus sinensis; type=EST; length=637bp
TGAGTAATGTTTCAAAATTGCATAAATGTCATAGATTCACTGTTATAATG
CAGAAAGTTGAAGCTGCACTCCAGAACGGTCCTTATATATCTAATCATGG
AATGGTATTGGAGGATGATCCAGAGTATCAGCTAATTGTCGATTGTAATG
TTCCATAAATTGACATATAGAATGAGATTGTGATTATTCATAATTTCATT
CGCGACAAGTACAGACTGAAATTTCCAGAGCTTGAATCTTTAGTCCATCA
CCCCATTGATTATGCCCGTGTTGTGAAAAAGATCGGCAACGAAATGGATT
TGACGCTTGTGGATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTG
GTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGT
GTTTCAAAGGACAATTGATGCATGTGATCGAGCTCTTGCACTTGATGCAG
CAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCG
CCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGG
AACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTC
AGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTT
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