CN185231

Overview
NameCN185231
Unique NameCN185231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:269..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP56_DICDI (Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = 3 
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLP-----SAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +R+ Y   FPEL  ++   + +A++ K I N+ +LT   L+ +        ++   V   A  + G  + +      +                  ++  +M  IAPNLSA+VG  + AKL+  AG L++LAK PA  VQ+LGA+K
Sbjct:  187 LREWYSWHFPELLKIIESQVHFAKLAKLIQNKKNLTEESLDEIKEILEDNESLAKDVLSAAKASMGGDISQIDLVTVMHFADRVISLDEYRTNLTQYLAKKMQDIAPNLSALVGDRIGAKLISRAGSLTSLAKYPASTVQILGAEK 332
The following BLAST results are available for this feature:
BLAST of CN185231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NOP56_DICDI5.358e-1129.45Nucleolar protein 56 OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185231 ID=CN185231; Name=CN185231; organism=Citrus sinensis; type=EST; length=637bp
TGAGTAATGTTTCAAAATTGCATAAATGTCATAGATTCACTGTTATAATG
CAGAAAGTTGAAGCTGCACTCCAGAACGGTCCTTATATATCTAATCATGG
AATGGTATTGGAGGATGATCCAGAGTATCAGCTAATTGTCGATTGTAATG
TTCCATAAATTGACATATAGAATGAGATTGTGATTATTCATAATTTCATT
CGCGACAAGTACAGACTGAAATTTCCAGAGCTTGAATCTTTAGTCCATCA
CCCCATTGATTATGCCCGTGTTGTGAAAAAGATCGGCAACGAAATGGATT
TGACGCTTGTGGATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTG
GTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGT
GTTTCAAAGGACAATTGATGCATGTGATCGAGCTCTTGCACTTGATGCAG
CAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCG
CCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGG
AACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTC
AGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTT
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