CN185229

Overview
NameCN185229
Unique NameCN185229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: YGEC_SCHPO (Uncharacterized actin family protein C1347.12 OS=Schizosaccharomyces pombe GN=SPBC1347.12 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.795e-55
Identity = 100/187 (53.48%), Postives = 139/187 (74.33%), Query Frame = 3
Query:   99 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            D QP+  DNG+G +KAGFAGDD P+ +FP+ VGR +H  VM    QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L   PEEHP+LLTE PL    N+EK+ +  +ET NVPA+  ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TD L
Sbjct:    8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACT29_DICDI (Putative actin-29 OS=Dictyostelium discoideum GN=act29 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.956e-55
Identity = 107/184 (58.15%), Postives = 141/184 (76.63%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT--GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            +V DNG+ + KAGF G+++PRA+F S+VGRP     GV  GMGQKD YVGDEA  K+ IL+LK P E     NWDD+EKI HH FYNELRV  ++  VLL+E PLNPK NRE++TQIMFETF+ P  Y+A Q+VLSLY+ GR  GIVLDSG+ +++TVPIYEG+++P++I +L++AG  +T+ L
Sbjct:   14 IVIDNGSYLCKAGFGGEESPRAIFRSVVGRPNFCTRGVKNGMGQKDCYVGDEAIVKKSILSLKCPNESKSPVNWDDIEKILHHVFYNELRVTIDKG-VLLSEIPLNPKENRERITQIMFETFDTPNFYLANQSVLSLYSKGRLNGIVLDSGNNITYTVPIYEGHSIPNSINQLEIAGNSVTEYL 196          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP2_ACACA (Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.473e-55
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   84 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            M D+  +  +VCDNGTG VK GFA  + P ++FPS+VGRP  R       +  KD  VGDEA   R +L + YP+++GIV NW+D E +W++TF+ +L+V P++  +LLTE P+NP ANREKM Q+MFE +   A Y+AIQAVL+LYA G  TG+V+DSGDGV+H VP+YEG++LPH   RL++AGRD+T
Sbjct:    1 MTDSSKV--IVCDNGTGFVKCGFARSNFPASIFPSMVGRPILRSEEKFDNVEIKDIMVGDEASKLRSMLQITYPLDNGIVRNWEDAEHVWNYTFFEKLKVDPKDCKILLTEPPMNPLANREKMVQVMFEKYGFKAAYIAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFSLPHLTRRLNVAGRDVT 188          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACT_CALFI (Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.454e-55
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 3
Query:  324 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            WDDMEKIWHHTFYNELRVAPEE PVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSH VP+YEGYALPHAI+RLDLAGR+LT+ L
Sbjct:    1 WDDMEKIWHHTFYNELRVAPEELPVLLTEAPLNPKANREKMTQIMFETFNMPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHGVPVYEGYALPHAIVRLDLAGRELTNYL 111          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACT_CRAVI (Actin (Fragment) OS=Crassostrea virginica PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 103/106 (97.17%), Postives = 104/106 (98.11%), Query Frame = 3
Query:  339 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI+RLDLAGRDLTD L
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRLDLAGRDLTDYL 106          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.719e-53
Identity = 97/186 (52.15%), Postives = 134/186 (72.04%), Query Frame = 3
Query:   99 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            D   ++ DNG+G+ KAG +G+  PR V  S+VG P+    + G  QK  +VG+EA  +  +L L YPIE G+++ W+DMEK+W H F  EL V   + PVL+TE  LNP+  REKM ++MFE+FNVPA Y++ QAVL+LYAS   TG+V+DSGDGV+ TVPI+EGY+LPHA+ +L +AGRD+T+ L
Sbjct:    8 DSPAVIFDNGSGLCKAGLSGEIGPRHVVSSVVGHPKFKTPLTGANQKKYFVGEEALHRHEVLQLHYPIERGLITGWEDMEKLWKHLFEWELGVKANDQPVLMTEPSLNPRETREKMAEVMFESFNVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLYVAGRDITEHL 193          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP2_XENTR (Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.552e-53
Identity = 99/189 (52.38%), Postives = 135/189 (71.43%), Query Frame = 3
Query:   90 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   RLD+AGRD+T
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRDCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDIT 190          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP2B_XENLA (Actin-related protein 2-B OS=Xenopus laevis GN=actr2-B PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.552e-53
Identity = 99/189 (52.38%), Postives = 135/189 (71.43%), Query Frame = 3
Query:   90 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   RLD+AGRD+T
Sbjct:    2 DSQGKKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRDCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDIT 190          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP2A_XENLA (Actin-related protein 2-A OS=Xenopus laevis GN=actr2-A PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.552e-53
Identity = 99/189 (52.38%), Postives = 135/189 (71.43%), Query Frame = 3
Query:   90 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   RLD+AGRD+T
Sbjct:    2 DSQGKKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRDCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDIT 190          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP2B_DANRE (Actin-related protein 2-B OS=Danio rerio GN=actr2b PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.058e-53
Identity = 98/189 (51.85%), Postives = 135/189 (71.43%), Query Frame = 3
Query:   90 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +   +  +LLTE P+NP  NREK+ ++MFET+    +Y+AIQAVL+LYA G  TG+V+DSGDGV+H  P+YEG++LPH   RLD+AGRD+T
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNINSRDCKILLTEPPMNPTKNREKIIEVMFETYQFTGVYIAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDIT 190          
The following BLAST results are available for this feature:
BLAST of CN185229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
YGEC_SCHPO3.795e-5553.48Uncharacterized actin family protein C1347.12 OS=S... [more]
ACT29_DICDI4.956e-5558.15Putative actin-29 OS=Dictyostelium discoideum GN=a... [more]
ARP2_ACACA6.473e-5553.16Actin-related protein 2 OS=Acanthamoeba castellani... [more]
ACT_CALFI8.454e-5591.89Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1[more]
ACT_CRAVI3.212e-5497.17Actin (Fragment) OS=Crassostrea virginica PE=2 SV=... [more]
ACTT2_BOVIN2.719e-5352.15Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]
ARP2_XENTR3.552e-5352.38Actin-related protein 2 OS=Xenopus tropicalis GN=a... [more]
ARP2B_XENLA3.552e-5352.38Actin-related protein 2-B OS=Xenopus laevis GN=act... [more]
ARP2A_XENLA3.552e-5352.38Actin-related protein 2-A OS=Xenopus laevis GN=act... [more]
ARP2B_DANRE6.058e-5351.85Actin-related protein 2-B OS=Danio rerio GN=actr2b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185229 ID=CN185229; Name=CN185229; organism=Citrus sinensis; type=EST; length=656bp
ACTTAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCCAATTTTTCT
CTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGA
TATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGAT
TTGCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGG
CCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGT
TGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAA
TTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCAT
CATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCT
TCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCC
AAATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAG
GCCGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGA
TTCTGGTGATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCC
TTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGAT
GCATTG
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