CN185229

Overview
NameCN185229
Unique NameCN185229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP3_BOVIN (Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 8.493e-39
Identity = 87/194 (44.85%), Postives = 114/194 (58.76%), Query Frame = 3
Query:  114 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            V D GTG  K G+AG+  P+ + PS         VG      VM G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 201          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP3_YEAST (Actin-related protein 3 OS=Saccharomyces cerevisiae GN=ARP3 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 90/231 (38.96%), Postives = 124/231 (53.68%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--PRHTGVMVGMGQKDA----------------------------------------YVGDEA--QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            +V DNGTG+ K GFAG+D+P  VFP+ +    P +T    G+G   A                                        Y+G+EA   S+    +L YPI HG V NWD ME+ W ++ +  LR  PE+H  LLTE PLNP  NRE++ +I FE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  AI  + +AGRD+T
Sbjct:    9 VVMDNGTGLTKLGFAGNDSPSWVFPTAIATAAPSNTKKSSGVGAPSAVSNEASYFGNSTSATNFNGATGGLLSNNLSGKRGTEDLDFYIGNEALVASQGPSYSLSYPIRHGQVENWDHMERFWENSIFKYLRTEPEDHFFLLTEPPLNPPENREQVAEIFFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVIDSGDGVTHVIPVAEGYVIGSAIKNIPIAGRDIT 239          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACTL9_HUMAN (Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 80/179 (44.69%), Postives = 112/179 (62.57%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            +V D GTG  K GFAG  +P     +I+G         G      ++G+ A+     LTL  P+  GIV +WD  E IW H   ++LRVA  +HP+L ++ P +P  NREK+ ++ FE+   PAMYVA Q+VLS+YA GR +G+V+D+G GV++TVP+++GY L HA  RLDLAG  LT
Sbjct:   52 VVIDMGTGTCKVGFAGQASPTYTVATILGCQPKKPATSGQSGLQTFIGEAARVLPE-LTLVQPLRSGIVVDWDAAELIWRHLLEHDLRVATHDHPLLFSDPPFSPATNREKLVEVAFESLRSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLLHATERLDLAGNHLT 229          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACL7B_HUMAN (Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 79/185 (42.70%), Postives = 116/185 (62.70%), Query Frame = 3
Query:  102 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            I+ ++ D G+   K G+AG+  P     S VG+        G  +K   VG E  +    L L  P++HGIV +WD ++ IW + F   +++ PEEH VL+++ PL+P +NREK  ++MFETF +PAM+V  Q++LS+Y+ G+T+G+V++SG GVSH VPI EG  LP    R D AG DLT+ L
Sbjct:   49 IKAVIIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKWTLVGHELLNTEAPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNREKYAELMFETFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGDLTNYL 233          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 85/194 (43.81%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  114 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            V D GTG  K GFAG+  P+ + PS         VG      +  G+   D ++GDEA    G  ++KYP+ HG+V +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGR++T
Sbjct:    9 VIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFDATGY-SIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNIT 201          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP3_TAKRU (Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 86/194 (44.33%), Postives = 114/194 (58.76%), Query Frame = 3
Query:  114 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            V D GTG  K G+AG+  P+ + PS         VG      +M G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIMPSCIAIKESSKVGDQAQRRMMRGVDDLDFFIGDEAIDKPPYAT-KWPIRHGIVEDWDLMERFMEQIIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 201          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACL7B_MACFA (Actin-like protein 7B OS=Macaca fascicularis GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.190e-38
Identity = 79/185 (42.70%), Postives = 115/185 (62.16%), Query Frame = 3
Query:  102 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            I+ +V D G+   K G+AG+  P     S VG+        G  +K   VG E  +    L L  P++HGIV +WD ++ IW + F   +++ PEEH VL+++ PL+P +NREK  ++MF TF +PAM+V  Q++LS+Y+ G+T+G+V++SG GVSH VPI EG  LP    R D AG DLT+ L
Sbjct:   49 IKAVVIDLGSQYCKCGYAGEPRPTYFISSTVGKRCPEAADAGDTRKGTLVGHELLNTETPLKLVNPLKHGIVVDWDCVQDIWEYIFRTAMKILPEEHAVLVSDPPLSPSSNREKYAELMFGTFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGDLTNYL 233          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP3_CHICK (Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.226e-37
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = 3
Query:  114 VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            V D GTG  K G+AG+  P+ + PS +       V        + G+   D ++GDEA  K    T K+PI HGIV +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +   I  + +AGRD+T
Sbjct:    9 VVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVVDQAQRRVLKGVDDLDFFIGDEAIEKPTYAT-KWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 201          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP3_ARATH (Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.038e-36
Identity = 84/205 (40.98%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVG------------------RPRHTGVMVGMGQKDAYVGDEAQSKR---GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            +V DNGTG  K GFAG+  P  + P++V                      + GV   +   D Y+GDEA +K        L YPIEHG V +WD ME+ W    +N LR  PE+H  LLTE+PL P  +RE   +I+FETFNVP +Y+A+ +VL+L A   T     TG+V+D GDG +H VP+ EGY +   I  + +AG+D+T
Sbjct:    9 IVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADL---DFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVAEGYVIGSCIKSIPIAGKDVT 210          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.557e-35
Identity = 79/213 (37.09%), Postives = 120/213 (56.34%), Query Frame = 3
Query:   84 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG---------------------RPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            M   +++  +V D G+   KAG+AG+DAP+AVFPS++G                         T       ++  YVG +A S +R  + +  PI+ GIVS+WD ++ IW H F + L + P EHP+LL E PLN +  REK  ++MFE + VPA+++A   VL+ +A+GR T +V+D G G +   P+++GY L  A++   L G  LTD L
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCL 213          
The following BLAST results are available for this feature:
BLAST of CN185229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP3_BOVIN8.493e-3944.85Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=... [more]
ARP3_YEAST1.892e-3838.96Actin-related protein 3 OS=Saccharomyces cerevisia... [more]
ACTL9_HUMAN1.892e-3844.69Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2... [more]
ACL7B_HUMAN1.892e-3842.70Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE... [more]
ARP3_DROME2.471e-3843.81Actin-related protein 3 OS=Drosophila melanogaster... [more]
ARP3_TAKRU3.227e-3844.33Actin-related protein 3 OS=Takifugu rubripes GN=ac... [more]
ACL7B_MACFA7.190e-3842.70Actin-like protein 7B OS=Macaca fascicularis GN=AC... [more]
ARP3_CHICK1.226e-3743.30Actin-related protein 3 OS=Gallus gallus GN=ACTR3 ... [more]
ARP3_ARATH1.038e-3640.98Actin-related protein 3 OS=Arabidopsis thaliana GN... [more]
ARP4_ARATH2.557e-3537.09Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185229 ID=CN185229; Name=CN185229; organism=Citrus sinensis; type=EST; length=656bp
ACTTAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCCAATTTTTCT
CTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGA
TATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGAT
TTGCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGG
CCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGT
TGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAA
TTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCAT
CATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCT
TCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCC
AAATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAG
GCCGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGA
TTCTGGTGATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCC
TTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGAT
GCATTG
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