CN185229

Overview
NameCN185229
Unique NameCN185229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.101e-29
Identity = 67/195 (34.36%), Postives = 116/195 (59.49%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDAYVG-------DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            +++  LV D G+  V+AG+AG+D P+  FP+ +G    R   + +M   G K    G       +  +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T++MFE +++PA ++   AVL+ +A+GR+TG++LDSG   +  +P+++GY L   I++  LAG  +T
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFIT 203          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACTL8_HUMAN (Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.834e-26
Identity = 68/187 (36.36%), Postives = 105/187 (56.15%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--------PRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            ++ D+G+G +KAG AG + P+ VFP+IV          P +    V +G    +            T  YPIE G + NW+ ++ +W     N  R   E  PV++TE PL   A+R+KM +I+FE  +VP++ +A Q  +SLYASG  TG+V+DSG G++   P ++G  LP +   L+ AG+DL+
Sbjct:    6 VIIDHGSGFLKAGTAGWNEPQMVFPNIVNYLPCKENPGPSYARRRVSLGIDICHPD----------TFSYPIERGRILNWEGVQYLWSFVLENHRR-EQEVPPVIITETPLREPADRKKMLEILFELLHVPSVLLADQLQMSLYASGLLTGVVVDSGYGLTRVQPFHQGRPLPASGKTLEFAGQDLS 181          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ACT1_PSEMZ (Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.434e-22
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3
Query:  294 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 428
            YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
Sbjct:    1 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 45          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.232e-21
Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  294 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            +PI+HG+V +WD +E +W       L+V PE+ PVL++++P  P   REK+ +++FE   VPA ++A  A+L+L + G  +G+ +++G GV H  PIY G++   A  RL++AG  L+
Sbjct:   37 HPIKHGVVVDWDALEGLWERLMVGGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLS 154          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_SCHPO (Actin-like protein arp5 OS=Schizosaccharomyces pombe GN=arp5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.232e-21
Identity = 57/179 (31.84%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  108 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL-KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            PLV DNG+  ++AG+ G+  P+ VF ++V R R       + +    VG++   + G  ++ + P E  ++SNWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT+++FE +N P++   I  + S Y + +  ++GIVL+ G+  SH +P+  G  +     R+   G
Sbjct:   26 PLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSJ (Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  102 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 650
            ++ +V D G+ ++KAG A  D +P  V PS           + +  +D  +GD A  +  +     P+  G V +WD ME + ++  Y+ +     +E  +L TE    PKA RE++ Q+MFE FNV   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R D+ G DLT+
Sbjct:    1 MEAVVVDAGSKLLKAGIALPDQSPSLVMPS----------KMKLEVEDGQMGDGAVVEEVV----QPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTN 171          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSI (Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  102 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 650
            ++ +V D G+ ++KAG A  D +P  V PS           + +  +D  +GD A  +  +     P+  G V +WD ME + ++  Y+ +     +E  +L TE    PKA RE++ Q+MFE FNV   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R D+ G DLT+
Sbjct:    1 MEAVVVDAGSKLLKAGIALPDQSPSLVMPS----------KMKLEVEDGQMGDGAVVEEVV----QPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTN 171          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 70/184 (38.04%), Postives = 95/184 (51.63%), Query Frame = 3
Query:  102 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            ++ LV D G+  +KAG A  D +P  + PS + R      MV  G   A   D   +    +TL  PIE G++ +WD ME +  +  Y  L      E  +L T+    PKA RE++ Q+MFETFNV   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R +L G +LT
Sbjct:    1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR------MVDDGSSSA---DNPTTVFEDVTLD-PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELT 174          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.043e-20
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            +++  +V D G+   + GF+G+D P+ V PS  G       + G    + Y+    +S  G + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MFE+   PA Y+A Q   + +ASG+ T  ++D G   S    IY+G+ L         +G  + D L
Sbjct:    9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_YARLI (Actin-related protein 4 OS=Yarrowia lipolytica GN=ARP4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.964e-20
Identity = 57/187 (30.48%), Postives = 93/187 (49.73%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAY-------VGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            +++  LV D G+   + G+AG+D P+ V  +  G      V +     +         VGD A      + + +P+  GIV++WD ++ IW ++    L    + HP++LTE   N +AN+ K  +I FE+  VPA Y+   AV S +A+G+   +VLD G  V+   P+ +G  L     R   AG
Sbjct:   14 DEVATLVIDTGSSYTRVGYAGEDTPKLVVSTECGLMADEDVEMEDDTSNTTKKLNKYKVGDSANLPLPNMEVLHPLTDGIVADWDAVQNIWEYSLAR-LNADTKTHPLMLTEPCWNTQANKLKALEIAFESLEVPASYLVKDAVASAFAAGKGNALVLDVGSEVASVTPVIDGLVLYKPARRSQYAG 199          
The following BLAST results are available for this feature:
BLAST of CN185229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ACL6A_MOUSE6.101e-2934.36Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACTL8_HUMAN2.834e-2636.36Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2... [more]
ACT1_PSEMZ9.434e-22100.00Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 S... [more]
CT134_MOUSE1.232e-2138.98Putative uncharacterized actin family protein C20o... [more]
ARP5_SCHPO1.232e-2131.84Actin-like protein arp5 OS=Schizosaccharomyces pom... [more]
ARP7_ORYSJ6.115e-2135.14Actin-related protein 7 OS=Oryza sativa subsp. jap... [more]
ARP7_ORYSI6.115e-2135.14Actin-related protein 7 OS=Oryza sativa subsp. ind... [more]
ARP7_ARATH7.986e-2138.04Actin-related protein 7 OS=Arabidopsis thaliana GN... [more]
ARP4_SCHPO1.043e-2031.55Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ARP4_YARLI3.964e-2030.48Actin-related protein 4 OS=Yarrowia lipolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185229 ID=CN185229; Name=CN185229; organism=Citrus sinensis; type=EST; length=656bp
ACTTAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCCAATTTTTCT
CTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGA
TATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGAT
TTGCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGG
CCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGT
TGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAA
TTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCAT
CATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCT
TCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCC
AAATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAG
GCCGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGA
TTCTGGTGATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCC
TTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGAT
GCATTG
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