CN185229
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.176e-20 Identity = 53/182 (29.12%), Postives = 97/182 (53.30%), Query Frame = 3 Query: 96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635 E+I LV D G+ + G+AG+++P + PS + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE +VPA Y+ QAV +A+ ++T +++D G + P+ +G + I + LAG Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAG 183
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.830e-20 Identity = 59/192 (30.73%), Postives = 98/192 (51.04%), Query Frame = 3 Query: 111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR---------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656 +V DNG G++KAG G+ P V P+ + +P + + + DE ++ PI+ G + N D +IW H F + L +AP +LLTEAPL+ + + +++FE F ++Y+A Q+++ LY + R +V+D G +H VP+ + L HAI R+DL G+ T+ L Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTT-LSDEIDLTSA--AVRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLGGKAFTNYL 193
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.355e-19 Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = 3 Query: 111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656 +V DNG G++KAGF GD P AV P+ + +P G K V D+ Q++ +TL+ PI+ G + N + ++W N L+V P +LL E NP A + +++FE ++ VA +++ LY + R +V+D G +H P+ + + L +A+ R+DL G+ LT+ L Sbjct: 8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYL 192
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.355e-19 Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = 3 Query: 111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656 +V DNG G++KAGF GD P AV P+ + +P G K V D+ Q++ +TL+ PI+ G + N + ++W N L+V P +LL E NP A + +++FE ++ VA +++ LY + R +V+D G +H P+ + + L +A+ R+DL G+ LT+ L Sbjct: 8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYL 192
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19 Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 3 Query: 84 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------------MGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 443 M +++ +V D G+ KAG+AG+DAP+AVFPS+VG G+ + G++ Y G +A + +R + + P + GIV++WD ++ +W H F N L + P EHP+LL E PLN + REK Sbjct: 1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17 Identity = 60/220 (27.27%), Postives = 100/220 (45.45%), Query Frame = 3 Query: 96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELR--------------------------VAPEE-----HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656 ++I +V D G +AGFAG+D P++V P+ G+ + Q+ GD+ + R L++ P+ G+V +WD EK+W ++F + L V EE P+L+TE NP REK +I E + PA Y+A VL+ +A+G+ + +V+D G P+++G L + L G ++ L Sbjct: 9 DEISAIVLDPGFSTTRAGFAGEDTPKSVIPTYYGKYTYE------AQEKLIFGDDIFVTPRPGLSIHNPMGRDGVVEDWDMAEKVWEYSFTSRLTGPKAGNPFQNGLNDVANGELPSEMEGVETEEKPLADSPLLMTECGWNPTKAREKTVEIAMEKWGTPAFYLARNGVLAAFAAGKASALVVDVGASNISVTPVHDGMILKRGVQHSPLGGDYISSQL 222
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16 Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 3 Query: 96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELRVAP-------------------------------EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635 +++ +V D G +AGFAG+D P+++ P+ G+ GQ+ GD+ + R L++ P+ G+V +WD EK+W ++F + L A + P+L++E NP REK +I E + PA Y+A VL+ +A+G+ + +V+D G P+++G L + L G Sbjct: 15 DEVSAIVLDPGFSTTRAGFAGEDTPKSLVPTYYGKYSFE------GQEKLIFGDDVFVTPRPSLSVGNPMGRDGVVEDWDMAEKLWEYSFTSRLTGAKPSNPLHNGLNDLVEGELPTEMEGVETNEKPLADSPLLMSECSWNPTKAREKTIEIAMEKWGTPAFYLARNGVLASFAAGKASALVVDIGASNISVTPVHDGMVLKRGVQHSPLGG 221
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_GIBZE (Actin-related protein 4 OS=Gibberella zeae GN=ARP4 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16 Identity = 58/219 (26.48%), Postives = 98/219 (44.75%), Query Frame = 3 Query: 96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK-YPIEHGIVSNWDDMEKIWHHTFYNELRVA---------------PE-----------------------EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635 +++ LV D G +AGFAG+D P+++ PS G + G +D + GDE R ++ Y + +V +WD +IW + N L+ PE E+P+L+TEAP N REK +I+ E + PA +++ VL+ +A+G+ T +V+D G + I++G L +I + + G Sbjct: 19 DEVSALVLDPGYCSTRAGFAGEDVPKSILPSFYGH------VTGDNSRDLF-GDECLIPRENYEVRNYMNKDSVVEDWDVAARIWENMLVNRLQPERQTPPSKNGLNDDPRPEGQDGEGDVAMDDAEAESMEKPLGENPLLVTEAPWNTPKAREKAIEIIMENWGCPAFWMSRTPVLAAFAAGKATSLVIDVGGANTSVTAIHDGMVLKRSIQKSPVGG 230
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.735e-16 Identity = 53/189 (28.04%), Postives = 92/189 (48.68%), Query Frame = 3 Query: 96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656 ++I +V D G+ G++G D P+A+ PS G+ G+KD +++ R + +++G V +W+ EK W +ELR P LLTE N + NR+K +++ E+ + A Y+ A +A GR T +V+D G V+ P+ +G L + +R +AG L + + Sbjct: 12 DEITAVVIDPGSFTTNIGYSGTDCPQAILPSCYGKYTE-------GEKDELFSEQSIGLPRKDYEIHNIVQNGEVVDWEKAEKQWDWAIRSELRFETNSGMPALLTEPIWNSEENRKKSLEVLLESMDFSACYLVPTATAVSFAMGRPTCLVVDIGHDVTSVCPVVDGMTLSKSSMRSYIAGSLLNELI 193
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP6_CRYNE (Actin-like protein ARP6 OS=Cryptococcus neoformans GN=ARP6 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15 Identity = 61/193 (31.61%), Postives = 91/193 (47.15%), Query Frame = 3 Query: 111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKY--PIEHGIVSNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL----SLYASGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656 L+ DNG +KAG +G D V P+ + R R +K YVGDE + + + + Y P E G++ NWD IW F + L + P E +L+TE N E Q++FE F + + A L LY S + IV+D G +H VPI +G + + R+D+ G+ LT+ L Sbjct: 7 LIIDNGAYEIKAGISGVDWEPRVLPNSIARSRT--------EKRVYVGDEIDNCKDLSGIVYRRPFEKGMLVNWDAERIIWDRLFSPSVLNINPTETSLLVTEPYFNLPNIAETYDQMIFEEFEFQSYFRCAPAALIPYGGLYESDQGIPPQCTIVIDMGYSYTHVVPIRDGQIVWEHVKRIDVGGKLLTNHL 191 The following BLAST results are available for this feature:
BLAST of CN185229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 473
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185229 ID=CN185229; Name=CN185229; organism=Citrus sinensis; type=EST; length=656bpback to top |