CN185229

Overview
NameCN185229
Unique NameCN185229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_KLULA (Actin-related protein 4 OS=Kluyveromyces lactis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 51/184 (27.72%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 644
            ++I  +V D G+ +   G++G D P+++ PS  G     G       K  +        R  + +K  +E+  + +WD  ++ W +    +L+    +  PVLLTE   N +A+R+K  +I+ E+    A Y+A  +    +A GR T +V+D G  VS   P+ +G  L  +  R  +AG+ L
Sbjct:   12 DEINAIVIDPGSFVTNIGYSGTDCPQSIMPSSYGNVETDG-----DTKRIFNEQPLLFPRAGMEIKPIVENSTIVDWDRAQEQWEYALNTDLKFESNKGTPVLLTEPIWNSEASRKKSLEILLESMEFEACYLAANSSAVSFAMGRPTCLVVDIGHDVSTVSPVIDGMTLSKSSTRNYVAGKYL 190          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP6_NEUCR (Actin-like protein arp-6 OS=Neurospora crassa GN=arp-6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 62/205 (30.24%), Postives = 97/205 (47.32%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDA----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNE---LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY----ASGRTTGIVLDS--------GDGVSHT--VPIYEGYALPHAILRLDLAGRDLTDAL 656
            LV DNG   +KAGF  DD     PR + P+ + R RH  +         YVG E +  +    L  + P+E G + NW+  ++IW   F+++    +  P +  ++LTE P +  + +    QI+FE +   + Y  +  V + Y    +  RT    +DS          G SHT   PI +G  L  AI RLD+ G+ +T+ L
Sbjct:   22 LVLDNGADTIKAGFVSDDKSDGKPR-IIPNCLARDRHRKI---------YVGSELEKCKDFSELAFRRPVEKGFIVNWEAQKEIWDREFFDDKAAQKCDPSDTRLILTEQPNSLPSLQTHCDQIVFEEYGFASYYRGLGPVFNAYRDIQSIFRTPQSTIDSPAQVILLIDSGYSHTTVTPILQGRPLHPAIRRLDVGGKLMTNYL 216          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_YEAST (Actin-related protein 5 OS=Saccharomyces cerevisiae GN=ARP5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 52/190 (27.37%), Postives = 96/190 (50.53%), Query Frame = 3
Query:  108 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL-KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY---ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            P+  D G+  ++AGF     P  +FP+ + + R       + +   +VG++    + + +  + P +   V+NW+  E+I  +TF++ L V P+    +P+LLTE     ++ R    QI+FET+NVP +   I ++ S Y    SG  TG+V+  G   ++ +P+ +G  +     R++  G    D L
Sbjct:   39 PIAIDFGSSKLRAGFVNHATPTHIFPNALTKFRDRK----LNKNFTFVGNDTLLDQAVRSQSRSPFDGPFVTNWNLTEEILDYTFHH-LGVVPDNGIPNPILLTERLATVQSQRTNWYQILFETYNVPGVTFGIDSLFSFYNYNPSGNKTGLVISCGHEDTNVIPVVDGAGILTDAKRINWGGHQAVDYL 223          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_YEAST (Actin-related protein 4 OS=Saccharomyces cerevisiae GN=ARP4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 51/182 (28.02%), Postives = 84/182 (46.15%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 638
            +++  +V D G+     G++G D P+++ PS+ G+          G K  +        R    LK  IE+G+V +WD  ++ W     NEL +      P LLTE   N   NR+K  +++ E     A Y+A  +    +A+GR   +V+D G       PI +G  L  +  R  +AG+
Sbjct:   12 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGK-----YTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGK 188          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_AEDAE (Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 48/183 (26.23%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQ---KDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            +V DNG+   +AG+AG D P  VF +++ +PR         +       +G++  +   +   L+   +  +V++    E+I+ + F   L +  +    HPVLLTE   NP  +R  M+++MFE + +P +  A+  +LS   + G+ +G+++  G   +H +P+  G  +   + R++L G
Sbjct:   30 IVIDNGSYHCRAGWAGKDVPSLVFKNVLAKPRKDRSKKDTSEVVVPTVQIGNDITNIEAVRFQLRTQFDRNVVTHLHVQEQIFDYLF-GRLGINADGCVPHPVLLTECVANPNYSRMLMSELMFECYGIPGIVYAVDGLLSYRMNGGQDSGLIVSCGYQATHVIPVLNGRMVEDKVRRINLGG 211          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_DICDI (Actin-related protein 5 OS=Dictyostelium discoideum GN=arpE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 53/191 (27.75%), Postives = 98/191 (51.31%), Query Frame = 3
Query:  108 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV-MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA------SGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDAL 656
            P++ DNG+   +AGFA D +P+ +F S+VG+ + T   +VG   K+   GD ++     LT+K P +  ++ +    E I+ + F+        E+PVL+TE   NP   R+ M++++FE +N+ ++   I ++ S Y        G    +++ S    +H   + + Y + H    R+++ G   TD L
Sbjct:   32 PIIIDNGSYQCRAGFANDISPKLIFRSLVGKVKSTSSPIVGNSLKE---GDISR-----LTIKSPFDSNLLVHPPSQESIFDYIFHKFGIENEIENPVLITEPTSNPTFCRKYMSELLFECYNIKSVVYGIDSLFSFYGQRDQFKDGGKNSLIIGSSFNTTHIYNV-QNYNVSHQQTKRINIGGGASTDYL 213          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 57/189 (30.16%), Postives = 95/189 (50.26%), Query Frame = 3
Query:  108 PLVCDNGTGMVKAGFAGDDA-----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            PLV DNG+   +AG+A  D      P   F S+  R R  G   G G  +  VG++  S   +   L+ P +  +    +  E ++ H F   L VA +   +HP++LTEA  NP  +R+ M++++FE + VP +   + ++ S Y + R     +G+V+ SG   +H +P+ EG        R++L G
Sbjct:   33 PLVIDNGSFQTRAGWAAADPSVPAEPLLRFRSLAARSR--GARGGAGA-ETQVGNDLGSPEPLRWLLRSPFDRNVPVQLELQELLFDHVF-QRLGVASQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYQVPKVSYGVDSLYSFYHNRRQNWPCSGLVISSGYQCTHILPVLEGRLDAKNCKRINLGG 217          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP11_HUMAN (Actin-related protein 11 OS=Homo sapiens GN=ARP11 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  456 MFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 647
            MFE+FNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T
Sbjct:    1 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 72          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_CANGA (Actin-related protein 4 OS=Candida glabrata GN=ARP4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 48/195 (24.62%), Postives = 81/195 (41.54%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD-------AYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            ++I  ++ D G+     G+AG D P+++ PS  G              +        +        R    +K  +E+G V +WD   + W     NEL +      P +LTE   N K NR K  +I+ E     A Y+   +    +A+GR   +++D G  ++   P+ +G +L  +      AGR L   L
Sbjct:   12 DEITAVIIDPGSYTTNIGYAGTDCPQSILPSSFGEIHEAEESTSEDNTEKTRKTRKVFSEQSIPIPRPDYEVKRVVENGQVCDWDSAVEQWSWALRNELHIESNRGIPAMLTEPLWNSKENRSKSLEILLEGMEFEACYLTATSTAVSFATGRPNSLIVDIGHDIASVTPVIDGMSLSKSTRCNHFAGRFLNKLL 206          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP7_YEAST (Actin-related protein 7 OS=Saccharomyces cerevisiae GN=ARP7 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 44/179 (24.58%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPS-IVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR---EKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            +V  NG+    AGF+  + P+ + PS  + R    G    +      +   A+ + G          G+  NWD +E  W + +  +L+V+PEE P+++T    N K +    E+  ++ F+  NVP   + I+ +    + G+++  V+D G    +  PI +G  + +A++R    G
Sbjct:    8 VVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAEKRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAILERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVVRSKFGG 186          
The following BLAST results are available for this feature:
BLAST of CN185229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP4_KLULA2.251e-1527.72Actin-related protein 4 OS=Kluyveromyces lactis GN... [more]
ARP6_NEUCR2.939e-1530.24Actin-like protein arp-6 OS=Neurospora crassa GN=a... [more]
ARP5_YEAST2.939e-1527.37Actin-related protein 5 OS=Saccharomyces cerevisia... [more]
ARP4_YEAST2.939e-1528.02Actin-related protein 4 OS=Saccharomyces cerevisia... [more]
ARP5_AEDAE6.548e-1526.23Actin-related protein 5 OS=Aedes aegypti GN=Arp5 P... [more]
ARP5_DICDI5.543e-1427.75Actin-related protein 5 OS=Dictyostelium discoideu... [more]
ARP5_CHICK5.543e-1430.16Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]
ARP11_HUMAN7.240e-1451.39Actin-related protein 11 OS=Homo sapiens GN=ARP11 ... [more]
ARP4_CANGA2.751e-1324.62Actin-related protein 4 OS=Candida glabrata GN=ARP... [more]
ARP7_YEAST3.593e-1324.58Actin-related protein 7 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185229 ID=CN185229; Name=CN185229; organism=Citrus sinensis; type=EST; length=656bp
ACTTAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCCAATTTTTCT
CTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGA
TATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGAT
TTGCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGG
CCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGT
TGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAA
TTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCAT
CATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCT
TCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCC
AAATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAG
GCCGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGA
TTCTGGTGATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCC
TTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGAT
GCATTG
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