CN185229

Overview
NameCN185229
Unique NameCN185229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_USTMA (Actin-related protein 4 OS=Ustilago maydis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  387 EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            EHP+LLTE   N + +REK+T++ FET   PA Y+A ++VLS +A+G+ + +V+D G     T+PI +G+ L   I R +  G  +  AL
Sbjct:  181 EHPLLLTEPAWNSRESREKLTELAFETLGSPAFYLANRSVLSSFAAGKPSSLVIDVGSTNVSTIPIVDGFILRKGIYRHNNGGEAINRAL 270          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_CANAL (Actin-related protein 4 OS=Candida albicans GN=ARP4 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 42/187 (22.46%), Postives = 88/187 (47.06%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            ++I  +V D G+   + G+AGDD P+ +  S  G+ ++         K    G+     R    +K  ++  I+ +WD   + + + F  +L+V   E P+L+TE      + R+++ +  FE      +Y+A     + +  GR+  +V+D G       P+ +G  L  + ++ +  G+ L++ +
Sbjct:   13 DEINAIVLDPGSYTTRIGYAGDDFPKVITSSYYGQVKN--------DKKKIFGESINVPRANYDIKPILKESIIVDWDAAIEQYQYYFDQQLKVVGPEQPILITEPIWTETSYRQQLVETFFENDEFRGIYIAKSPTCASFQQGRSNCLVVDLGHDSVLVTPVIDGICLLKSSMKTNYGGKFLSNEI 191          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_HUMAN (Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 55/189 (29.10%), Postives = 95/189 (50.26%), Query Frame = 3
Query:  108 PLVCDNGTGMVKAGFA--GDDA---PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY----ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            PLV DNG+  V+AG+A  G D    PR  F ++  R R        G     VG+   S   +   L+ P +  +  N +  E +  ++F + L V+ +   +HP++LTEA  NP  +R+ M++++FE + +P +   I ++ S Y     +   +G+++ SG   +H +PI EG        R++L G
Sbjct:   32 PLVLDNGSFQVRAGWACPGQDPGPEPRLQFRAVCARGRGGA----RGASGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQH-LGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNKPKNSMCSGLIISSGYQCTHVLPILEGRLDAKNCKRINLGG 215          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP10_MOUSE (Actin-related protein 10 OS=Mus musculus GN=Actr10 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 644
            +V D G    K GFAG+  PR + PS++ R                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F VP++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L
Sbjct:   16 VVIDLGEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMSKPIKVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPILNCWGALPLGGKAL 171          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP4_DEBHA (Actin-related protein 4 OS=Debaryomyces hansenii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 41/193 (21.24%), Postives = 88/193 (45.60%), Query Frame = 3
Query:   96 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMV------GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            ++I  +V D+ +   + G+AGDD P+ + PS    P    + +      G  +     G+     R    +   ++  ++ +W+   + +H+ F + L +  +E P+L+TE        R+ + +  +E F+ PA+++A       +  GR   +V+D G       P+ +G +L    ++ +  G+ L D +
Sbjct:   14 DEINAIVLDSSSFHTRIGYAGDDFPKIITPSSYASPNEDAMELDNKKKNGKSKSSKIFGESINIPRSNHNVSPILKDSVIIDWEAAIEQYHYYFDDVLTLNYKEQPILITEPVWCTPQYRQTLLETFYENFDFPALFLAKSPTCISFQQGRPNCLVVDIGHDSVSVTPVIDGISLLKNSMKTNYGGQYLNDQI 206          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP10_HUMAN (Actin-related protein 10 OS=Homo sapiens GN=ACTR10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 48/178 (26.97%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 644
            +V D G    K GFAG+  PR + PS++ R                    A   + +  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F VP++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L
Sbjct:   16 VVIDLGEAFTKCGFAGETGPRCIIPSVIKR--------------------AGMPKPVRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKAL 171          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_MOUSE (Actin-related protein 5 OS=Mus musculus GN=Actr5 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 55/189 (29.10%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  108 PLVCDNGTGMVKAGFA--GDDA---PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY----ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            PLV DNG+   +AG+A  G D    PR  F ++  R R  G   G G +   VG+   S   +   L+ P +  +  N +  E +  ++F + L V+ +   +HP++LTEA  NP  +R+ M++++FE + +P +   I ++ S Y     +  ++G+++ SG   +H +P+ EG        R++L G
Sbjct:   32 PLVLDNGSFQARAGWACPGPDPGPEPRLQFRAVCARGRG-GARGGPGPQ---VGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQH-LGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYRIPKVAYGIDSLFSFYHNVPKNALSSGLIISSGYQCTHILPVLEGRLDAKNCKRINLGG 215          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP10_BOVIN (Actin-related protein 10 OS=Bos taurus GN=ACTR10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 48/178 (26.97%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 644
            +V D G    K GFAG+  PR + PS++ +                    A   + I  ++Y I    + ++  +++  H  ++  L V P +  V++ E+ L P   RE +T+++F+ F VP++ +A   +++L   G  + +VLD G   S  +PIYEG  + +    L L G+ L
Sbjct:   16 VVIDLGEAFTKCGFAGETGPRCIIPSVIKK--------------------AGMPKPIRVVQYNINTEELYSY--LKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKAL 171          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP6_DROME (Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 51/195 (26.15%), Postives = 92/195 (47.18%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPI--EHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY-----ASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 656
            +V DNG    K G A  D P  V P+ + + +         ++ A+VG++    R    L Y +  + G + NW   + +W + F  + +  + E   +++TE  +N ++ +E   +I+FE + V  +Y    A L+ +     +  RTT      I++D G   +H VP   G  +   I R+D+ G+ LT+ L
Sbjct:    6 VVLDNGAHTAKVGLANQDEPHVV-PNCIMKAKSE-------RRRAFVGNQIDECRDTSALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQL 192          
BLAST of CN185229 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 45/195 (23.08%), Postives = 91/195 (46.67%), Query Frame = 3
Query:  111 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-----HTGVMVGMGQK-------DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS-----LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 635
            LV DNG+   + G++    P   F +++ +PR           G   +       +  VG++  +   +   LK P E  +++NW+  E+I+ + F        +  +HP++LTEA  NP   R++M +++FE + +P++   I A+ S           +  +++  G   +H +P+ +G      + RL++ G
Sbjct:    7 LVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEGSASQTTVEQSAEIQVGNDITNIEAVRAHLKSPFERNVITNWNHQEQIFDYIFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGIDALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVGG 201          
The following BLAST results are available for this feature:
BLAST of CN185229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP4_USTMA3.593e-1341.11Actin-related protein 4 OS=Ustilago maydis GN=ARP4... [more]
ARP4_CANAL3.593e-1322.46Actin-related protein 4 OS=Candida albicans GN=ARP... [more]
ARP5_HUMAN1.045e-1229.10Actin-related protein 5 OS=Homo sapiens GN=ACTR5 P... [more]
ARP10_MOUSE1.045e-1227.53Actin-related protein 10 OS=Mus musculus GN=Actr10... [more]
ARP4_DEBHA1.783e-1221.24Actin-related protein 4 OS=Debaryomyces hansenii G... [more]
ARP10_HUMAN1.783e-1226.97Actin-related protein 10 OS=Homo sapiens GN=ACTR10... [more]
ARP5_MOUSE3.042e-1229.10Actin-related protein 5 OS=Mus musculus GN=Actr5 P... [more]
ARP10_BOVIN3.973e-1226.97Actin-related protein 10 OS=Bos taurus GN=ACTR10 P... [more]
ARP6_DROME5.189e-1226.15Actin-like protein 13E OS=Drosophila melanogaster ... [more]
ARP5_DROME1.972e-1123.08Actin-related protein 5 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185229 ID=CN185229; Name=CN185229; organism=Citrus sinensis; type=EST; length=656bp
ACTTAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCCAATTTTTCT
CTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGA
TATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGAT
TTGCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGG
CCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGT
TGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAA
TTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCAT
CATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCT
TCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCC
AAATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAG
GCCGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGA
TTCTGGTGATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCC
TTCCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGAT
GCATTG
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