DC887726

Overview
NameDC887726
Unique NameDC887726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 28/86 (32.56%), Postives = 52/86 (60.47%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   80 PVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            V+++F A WCGPCR I P+  E +K++ G +   KV+ DE   +A +Y + ++PT +  K+G + D V+GA  K  L  +I K
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVK 111          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            V+++F A WCGPCR I P+  E +K++ G +   KV+ DE   +A +Y + ++PT +  K+G + D V+GA  K  L  +I K
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVK 111          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  184 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 438
            V+V+F A WCGPCR I P   +L+K+    L   KV+TDE  S+A+ + I+++PT M  K G+  D V+GA  K  L ++I K L
Sbjct:   31 VVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL 113          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = -2
Query:  220 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 438
            V+V+ +A WCGPC+ I P +++ ++ Y      Y+++ DE   +A   GIR++PT ++FK+G+K   V+GA P
Sbjct:   27 VVVDCFATWCGPCKAIAPTVEKFAQTYTDA-SFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANP 98          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 30/83 (36.14%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  187 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 435
            +V+F+A WCGPC+ + P +++LS+Q   K     VN D+   IA + G+ ++PT+++F+ G++ D ++GA  K TL++ + K+
Sbjct:   39 VVDFYADWCGPCKYLKPFLEKLSEQN-QKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVK-TLSSLLAKY 119          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.617e-11
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = -2
Query:  214 VEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKS 432
            V+ +A WCGPC+ I P+  +L+ +Y   K    KVN DE   IA+  G++++PT + F+NG++ D + GA P++
Sbjct:   24 VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQA 97          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.643e-11
Identity = 29/83 (34.94%), Postives = 55/83 (66.27%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            ++++F A WC PCR I P+  +L+K+++  +  +KV+ DE  ++A  + ++++PT +  K GE K+TV+GA  K  +  ++EK
Sbjct:   30 IVIDFTATWCPPCRFIAPVFADLAKKHLDVV-FFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAA-KEEIIANLEK 110          
The following BLAST results are available for this feature:
BLAST of DC887726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
THIOM_BOVIN2.274e-1132.56Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXH_ORYSJ2.970e-1138.55Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI2.970e-1138.55Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH1_ARATH2.970e-1143.53Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
THIO_EMENI2.970e-1138.36Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TRX2_SCHPO5.067e-1136.14Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TXL1_SCHPO6.617e-1139.19Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
TRXH3_ARATH8.643e-1134.94Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionDC887726 EIC Citrus sinensis cDNA clone EIC0794 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887726 ID=DC887726; Name=DC887726; organism=Citrus sinensis; type=EST; length=442bp
AGTAGCTTTAGTANTGGANTCAGGAAACACAATCACATCTCCTCATAACT
ATACAAGGGCAGAAGATAATTTATTGTGGAAAGCAAAGTATCTTAACCCA
AGGCATAGTAAGCTACAAGGCAAACAAACAAATGCTACAGAGAGCCTGTT
TCTAGCAAACGCGTCCTTTACTTACCATGTCTACAAGAATTTCTCTATGC
TGGTGGTCAAAGTGGATTTAGGAACAGCACCAATCACTGTATCTTTCTTC
TCGCCATTCTTAAATATCATGACAGTTGGGATGCTCCTAATTCCATATCT
AGTAGCAATTGAAGGACTCTCATCAGTATTAACCTTATAGCATTTTAGCT
TCCCCACATATTGCTTTGATAGCTCATCAATAATAGGGTGGATCATCCGG
CAAGGCCCGCACCATGGAGCCCAGAATTCAACAAGCACAGGT
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