DC887726

Overview
NameDC887726
Unique NameDC887726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_RICCN (Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.242e-25
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = -2
Query:  190 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 441
            PVLV+FWA WCGPC+M+ PIIDE+SK+  GK+K  K+N DE+P+  + YGIRSIPT+M+FKNGE+KDT IG   K++L   I K
Sbjct:   20 PVLVDFWAEWCGPCKMLTPIIDEISKELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINK 103          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.343e-24
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = -2
Query:  190 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 441
            PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YGIRSIPT+M+FKNGE+KDT IG   K++L   I K
Sbjct:   20 PVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINK 103          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.996e-24
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = -2
Query:  190 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 441
            PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YG+RSIPT+M+FKNGE+KDT IG   K +L   I K
Sbjct:   20 PVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQKDTKIGLQQKKSLLDWINK 103          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.219e-24
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -2
Query:  208 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 441
            PVLV+FWA WC PCRM+ PII+E+SK    K+K  K+N DE+P I ++YGIRSIPTVM+FKNGE+KDT +G   K++L
Sbjct:   20 PVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQKDTKVGLHQKNSL 97          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.383e-23
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PVLVEF+  WCGPCRM+H IIDE++  Y GKL CY +N D    +A  Y I+++P V++FKNGEK+++++G +PK    ++IE+ L
Sbjct:   86 PVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 171          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 44/86 (51.16%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PVLV F  PWCGPC+M+ P++DE++ +Y GK+K  KVNTDE+P +A++YG+RSIPT ++FK GE    ++GA PK+ L   ++  L
Sbjct:   21 PVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGEVAANMVGAAPKTRLAAFLDASL 106          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 43/84 (51.19%), Postives = 64/84 (76.19%), Query Frame = -2
Query:  190 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 441
            PVL++FWAPWCGPCRMI PI+DE++ ++ GK+K  K+N DE+ +   + G+RSIPT+++FKNG+   T +GA+PK+ L   I +
Sbjct:   21 PVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGKAVATQVGALPKNQLANFINQ 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.380e-22
Identity = 39/86 (45.35%), Postives = 65/86 (75.58%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            P+L++FWAPWCGPC+MI P++DEL+ ++ GK+K  K+N D++ +   ++G+RSIPT+++ KNG+   T +GA+PK+ L   I + +
Sbjct:   22 PILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVVATQVGALPKTQLANFINQHI 107          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.332e-22
Identity = 42/83 (50.60%), Postives = 63/83 (75.90%), Query Frame = -2
Query:  193 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 441
            PV+V+FWA WCGPC+MI P +DE++ +  G++K  KVN DE+P +A ++G+RSIPT+++FK+GE    ++GA PKS L   I+
Sbjct:   20 PVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGAAPKSRLADWIK 102          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.421e-21
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PV+V+FWA WCGPCR I P ++ELSK+Y GK+K  KVN DE+P      G+R IP + +FKNG+     +GA PK+ L T I   L
Sbjct:   21 PVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQVVSNKVGAAPKAALATWIASAL 106          
The following BLAST results are available for this feature:
BLAST of DC887726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
THIO_RICCN1.242e-2560.71Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=... [more]
THIO_RICPR2.343e-2458.33Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_RICTY3.996e-2457.14Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
THIO_RICBR5.219e-2461.54Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
TRXM3_ARATH3.383e-2350.00Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
THIO_STRAU5.770e-2351.16Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
THIO_PASMU1.285e-2251.19Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_HAEIN6.380e-2245.35Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO1_CORNE8.332e-2250.60Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_RHOSH1.421e-2151.16Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC887726 EIC Citrus sinensis cDNA clone EIC0794 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887726 ID=DC887726; Name=DC887726; organism=Citrus sinensis; type=EST; length=442bp
AGTAGCTTTAGTANTGGANTCAGGAAACACAATCACATCTCCTCATAACT
ATACAAGGGCAGAAGATAATTTATTGTGGAAAGCAAAGTATCTTAACCCA
AGGCATAGTAAGCTACAAGGCAAACAAACAAATGCTACAGAGAGCCTGTT
TCTAGCAAACGCGTCCTTTACTTACCATGTCTACAAGAATTTCTCTATGC
TGGTGGTCAAAGTGGATTTAGGAACAGCACCAATCACTGTATCTTTCTTC
TCGCCATTCTTAAATATCATGACAGTTGGGATGCTCCTAATTCCATATCT
AGTAGCAATTGAAGGACTCTCATCAGTATTAACCTTATAGCATTTTAGCT
TCCCCACATATTGCTTTGATAGCTCATCAATAATAGGGTGGATCATCCGG
CAAGGCCCGCACCATGGAGCCCAGAATTCAACAAGCACAGGT
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