DC887726

Overview
NameDC887726
Unique NameDC887726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_CHRVI (Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.421e-21
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  193 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 441
            PVLV++WA WCGPC+M  P+ DE++ +Y G++K  K N DE+P+   RYG R IPT+M+F+ GE + T +GAV KS LT  ++
Sbjct:   22 PVLVDYWADWCGPCKMXAPVXDEIADEYAGRVKXAKXNXDENPNTPPRYGXRGIPTLMLFRGGEVEATKVGAVSKSQLTAFLD 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -2
Query:  208 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 438
            +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:   24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -2
Query:  208 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 438
            +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:   24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -2
Query:  208 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 438
            +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:   24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = -2
Query:  193 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 441
            PVLV++WA WCGPC+MI P++DE+++ Y GKLK  K+N DE+     +YG+R IPT+M+FK+G  + T +GA+ KS L   ++
Sbjct:   23 PVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGNVEATKVGALSKSQLAAFLD 105          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -2
Query:  208 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 438
            +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:   24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -2
Query:  208 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 438
            +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:   24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.166e-21
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -2
Query:  208 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 438
            +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:   24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 100.138 bits (248), Expect = 4.135e-21
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = -2
Query:  184 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 438
            VLV+FWA WCGPC M+ P+I++L+  Y GK    K+N DE+P+IA +YGIRSIPT++I K G+  D ++GA+PK+ +   I++ +
Sbjct:   23 VLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = -2
Query:  184 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 435
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
The following BLAST results are available for this feature:
BLAST of DC887726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
THIO_CHRVI1.421e-2150.60Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=... [more]
THIO_SHIFL3.166e-2154.55Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY3.166e-2154.55Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI3.166e-2154.55Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_PSEAE3.166e-2149.40Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
THIO_ECOLI3.166e-2154.55Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL63.166e-2154.55Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO573.166e-2154.55Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
THIO_CHLLT4.135e-2149.41Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_HELPY9.212e-2150.00Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionDC887726 EIC Citrus sinensis cDNA clone EIC0794 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887726 ID=DC887726; Name=DC887726; organism=Citrus sinensis; type=EST; length=442bp
AGTAGCTTTAGTANTGGANTCAGGAAACACAATCACATCTCCTCATAACT
ATACAAGGGCAGAAGATAATTTATTGTGGAAAGCAAAGTATCTTAACCCA
AGGCATAGTAAGCTACAAGGCAAACAAACAAATGCTACAGAGAGCCTGTT
TCTAGCAAACGCGTCCTTTACTTACCATGTCTACAAGAATTTCTCTATGC
TGGTGGTCAAAGTGGATTTAGGAACAGCACCAATCACTGTATCTTTCTTC
TCGCCATTCTTAAATATCATGACAGTTGGGATGCTCCTAATTCCATATCT
AGTAGCAATTGAAGGACTCTCATCAGTATTAACCTTATAGCATTTTAGCT
TCCCCACATATTGCTTTGATAGCTCATCAATAATAGGGTGGATCATCCGG
CAAGGCCCGCACCATGGAGCCCAGAATTCAACAAGCACAGGT
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