DC887726

Overview
NameDC887726
Unique NameDC887726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.623e-17
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  184 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 438
            VL +FWA WCGPCRM+ P+++E+ ++    LK  K++ DE+P     +G+ SIPT++I K+GE  +T+IG  PK  L   I K++
Sbjct:   19 VLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.731e-17
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = -2
Query:  184 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 438
            VLV+FWA WC PC+++ PI+++++K+Y  KL   K+N D++P+ A +Y IR IP +++FKN E   T +GA+ K  L   +  +L
Sbjct:   24 VLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFKNSELVGTKVGALSKVQLKDFLNLYL 108          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 37/82 (45.12%), Postives = 57/82 (69.51%), Query Frame = -2
Query:  190 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 435
            LV+FWA WC PC+++ PI++E+SK+Y  K+   K+N +E+P+ A  Y IRSIPT+++F N E   T +GAV K  L   +++
Sbjct:   24 LVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVLATKVGAVSKLELKEFLDE 105          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.832e-16
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = -2
Query:  190 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 441
            PV ++FWA WCGPC+M+ P + +L+ ++ G+L   KVN D+ P  A R+ ++ IP +M+F  G+ K    GA+P   +   + K
Sbjct:   15 PVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLKWRTAGAIPYQQMRQEVLK 98          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_TREPA (Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.923e-16
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            V+V+FWAPWCG C+M+ P+++E+  +    +   K+N D+   +A  + + SIPT+++FK+G++ D  IG V KS + T I+K
Sbjct:   21 VIVDFWAPWCGSCKMLGPVLEEVESEVGSGVVIGKLNVDDDQDLAVEFNVASIPTLIVFKDGKEVDRSIGFVDKSKILTLIQK 103          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.554e-15
Identity = 32/83 (38.55%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            VLV+FWA WC PC+++ PI++E++++Y  K+K  K+N +++P+ A  Y IR IP +++F   E   T +GA+ K  L   +++
Sbjct:   23 VLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLFHGREVLATKVGAISKLQLKDFLDE 105          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 30/78 (38.46%), Postives = 54/78 (69.23%), Query Frame = -2
Query:  208 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 441
            PVLV+FWA WCGPC+M+ P+++E++ +   +L   K++ D +P +A  + + SIPT+++F+ G+    ++GA  K+ L
Sbjct:  369 PVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAKGKAAL 446          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = -2
Query:  208 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 441
            PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK+G+    ++GA  K+ L
Sbjct:   27 PVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAAL 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 9.865e-15
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = -2
Query:  208 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 441
            PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK+G+    ++GA  K+ L
Sbjct:   27 PVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAAL 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.683e-14
Identity = 32/86 (37.21%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PVLV+F+A WCGPC+M+ PI++++      +++  K++TD+ P+IAT+Y I+S+PT+++FK G+    + G    + L   ++ F+
Sbjct:   20 PVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105          
The following BLAST results are available for this feature:
BLAST of DC887726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
THIO_LISIN3.623e-1743.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_BUCBP4.731e-1742.35Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_BUCAI1.054e-1645.12Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]
THIO1_CHLTE6.832e-1638.10Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_TREPA8.923e-1639.76Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=... [more]
THIO_BUCAP7.554e-1538.55Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
TRXB_MYCLE9.865e-1538.46Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_MYCTU9.865e-1539.74Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO9.865e-1539.74Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO1_SYNY31.683e-1437.21Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]

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Properties
Property NameValue
Genbank descriptionDC887726 EIC Citrus sinensis cDNA clone EIC0794 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887726 ID=DC887726; Name=DC887726; organism=Citrus sinensis; type=EST; length=442bp
AGTAGCTTTAGTANTGGANTCAGGAAACACAATCACATCTCCTCATAACT
ATACAAGGGCAGAAGATAATTTATTGTGGAAAGCAAAGTATCTTAACCCA
AGGCATAGTAAGCTACAAGGCAAACAAACAAATGCTACAGAGAGCCTGTT
TCTAGCAAACGCGTCCTTTACTTACCATGTCTACAAGAATTTCTCTATGC
TGGTGGTCAAAGTGGATTTAGGAACAGCACCAATCACTGTATCTTTCTTC
TCGCCATTCTTAAATATCATGACAGTTGGGATGCTCCTAATTCCATATCT
AGTAGCAATTGAAGGACTCTCATCAGTATTAACCTTATAGCATTTTAGCT
TCCCCACATATTGCTTTGATAGCTCATCAATAATAGGGTGGATCATCCGG
CAAGGCCCGCACCATGGAGCCCAGAATTCAACAAGCACAGGT
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