DC887726

Overview
NameDC887726
Unique NameDC887726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = -2
Query:  187 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 438
            V+V+F+A WCGPC+ I P  +E SK Y  K+   KV+ DE   +  +  I S+PT  ++KNG   DT++GA   S L   IEK+
Sbjct:   21 VIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 102          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = -2
Query:  226 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 438
            V+++F+A WCGPC+MI P + ELS QY   +   KV+ DE   IA  Y I S+PT +  KNG K +   GA
Sbjct:   23 VVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGA 93          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_MYCPN (Thioredoxin OS=Mycoplasma pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.687e-12
Identity = 30/83 (36.14%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            V+++FWA WCGPC++  P   + + + V  +   KVN DE   IA  Y I S+PT+++F+ G++K   IG +PK+ +   + +
Sbjct:   21 VIIDFWAEWCGPCKITGPEFAKAASE-VSTVAFAKVNVDEQTDIAAAYKITSLPTIVLFEKGQEKHRAIGFMPKAKIVQLVSQ 102          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.509e-12
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  226 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 438
            ++++F A WC PCRMI PI ++L+K+++     +KV+ DE  S+A  +G+ ++PT +  K GE  D ++GA
Sbjct:   31 IVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGA 101          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.509e-12
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = -2
Query:  220 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 441
            PV+V+F A WCGPC+ I P +++LS+ + G ++ YKV+ DE   +A   G+ ++PT   +K GE+ + V GA P
Sbjct:   22 PVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANP 94          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.509e-12
Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            VL++F+A WCGPC+M+ P+++ L+ + +  +   KV+ D SP  A +Y + SIPT+++FK+G++ +  +G   K +L   I K
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLEALAAE-LPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISK 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.583e-12
Identity = 31/83 (37.35%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  190 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 438
            VLV+F+A WCGPC+M+ P+++ L+ + +  +   K++ D SP  A ++G+ SIPT+++FK+G++ +  +G   K +L   I K
Sbjct:   19 VLVDFFAEWCGPCKMLTPVLEALAAE-LPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISK 100          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.583e-12
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = -2
Query:  217 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 438
            V+++F+A WCGPC+MI P + ELS Q+   +   KV+ DE   IA  Y I S+PT +  KNG K +   GA  K
Sbjct:   31 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAK 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.583e-12
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PV+V+F A WCGPC+ + P ++E      G +   K+N D +  +A  YGI ++PTV  FKNGEK     G +    L   IE  L
Sbjct:   58 PVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSGVLDDEQLDDFIEDVL 143          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.985e-12
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = -2
Query:  208 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 438
            V+V+F+A WCGPC+++ PI +E++ Q        KV+ D++  I++ Y IRSIPTV+ F++G+  D  IG +PK+ L
Sbjct:   20 VVVDFYANWCGPCKILGPIFEEVA-QDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNEL 95          
The following BLAST results are available for this feature:
BLAST of DC887726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
THIO_PLAF72.057e-1242.86Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO2_DROYA2.057e-1246.48Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO_MYCPN2.687e-1236.14Thioredoxin OS=Mycoplasma pneumoniae GN=trxA PE=3 ... [more]
TRXH4_ARATH3.509e-1239.44Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
THIO_PENCH3.509e-1241.89Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_CHLTR3.509e-1237.35Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
THIO_CHLMU4.583e-1237.35Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO2_DROME4.583e-1244.59Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO2_CAEEL4.583e-1239.53Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
THIO_MYCGA5.985e-1242.86Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]

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Properties
Property NameValue
Genbank descriptionDC887726 EIC Citrus sinensis cDNA clone EIC0794 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887726 ID=DC887726; Name=DC887726; organism=Citrus sinensis; type=EST; length=442bp
AGTAGCTTTAGTANTGGANTCAGGAAACACAATCACATCTCCTCATAACT
ATACAAGGGCAGAAGATAATTTATTGTGGAAAGCAAAGTATCTTAACCCA
AGGCATAGTAAGCTACAAGGCAAACAAACAAATGCTACAGAGAGCCTGTT
TCTAGCAAACGCGTCCTTTACTTACCATGTCTACAAGAATTTCTCTATGC
TGGTGGTCAAAGTGGATTTAGGAACAGCACCAATCACTGTATCTTTCTTC
TCGCCATTCTTAAATATCATGACAGTTGGGATGCTCCTAATTCCATATCT
AGTAGCAATTGAAGGACTCTCATCAGTATTAACCTTATAGCATTTTAGCT
TCCCCACATATTGCTTTGATAGCTCATCAATAATAGGGTGGATCATCCGG
CAAGGCCCGCACCATGGAGCCCAGAATTCAACAAGCACAGGT
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