DC887722

Overview
NameDC887722
Unique NameDC887722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_LITLI (60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 74/105 (70.48%), Postives = 90/105 (85.71%), Query Frame = -3
Query:  309 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 620
            K+N  VSS R KNRK HF APS +RR +MS+P+S +LRQKYN RSMP+RKDDEVQVVRG +KG++ GKVVQVYR+K+V+HIERI REK NG+TV VGI+PSKV+I
Sbjct:    2 KFNKMVSSDRGKNRKRHFNAPSHMRRKIMSSPMSKELRQKYNCRSMPIRKDDEVQVVRGHFKGQQVGKVVQVYRKKFVVHIERIQREKANGATVYVGIHPSKVLI 106          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_SCHPO (60S ribosomal protein L26 OS=Schizosaccharomyces pombe GN=rpl26 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 67/105 (63.81%), Postives = 90/105 (85.71%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K++  V+SSRRK RKAHF APSSVRR+LMSAPLS +LR++Y +RS+PVR+DD++ V+RG+ KGREGK+  VYR+K+++ IER+TREK NG++  VGI+ SKVVIT
Sbjct:    2 KFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVIT 106          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.797e-32
Identity = 68/90 (75.56%), Postives = 82/90 (91.11%), Query Frame = -3
Query:  306 HFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 572
            HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 HFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_DICDI (60S ribosomal protein L26 OS=Dictyostelium discoideum GN=rpl26 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K N  VSSSRRK+RKAHFTA S  RRI MSA LS DLR KYNVRS+P+RKDDEV+VV G  K  EGKVV  YR+K+VIHI+++T  K NG+T  +G++PS V++T
Sbjct:    2 KRNTNVSSSRRKSRKAHFTASSGERRIRMSAALSHDLRTKYNVRSLPIRKDDEVRVVCGDNKNHEGKVVACYRKKYVIHIDKLTVTKTNGNTAQIGVSPSNVILT 106          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_CAEEL (60S ribosomal protein L26 OS=Caenorhabditis elegans GN=rpl-26 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 64/105 (60.95%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K NP VSS   K+RKAHF APS  RR +MSAPL+ +LR K+ +R++P+R DDEV V+RG +KG  G+V++ YR+K+VIHI++ITREK NGSTV++GI+PSKV IT
Sbjct:    2 KVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAIT 106          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26B_YEAST (60S ribosomal protein L26-B OS=Saccharomyces cerevisiae GN=RPL26B PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29
Identity = 58/100 (58.00%), Postives = 85/100 (85.00%), Query Frame = -3
Query:  306 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 605
            VSS RRK RKA+FTAPSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+  VYR K+ + ++++T+EKVNG++V + ++PSK+VIT
Sbjct:    8 VSSDRRKARKAYFTAPSSERRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26A_YEAST (60S ribosomal protein L26-A OS=Saccharomyces cerevisiae GN=RPL26A PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29
Identity = 58/100 (58.00%), Postives = 85/100 (85.00%), Query Frame = -3
Query:  306 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 605
            VSS RRK RKA+FTAPSS RR+L+SAPLS +LR +Y ++++P+R+DDEV VVRG+ KG+EGK+  VYR K+ + ++++T+EKVNG++V + ++PSK+VIT
Sbjct:    8 VSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL24_PYRHO (50S ribosomal protein L24P OS=Pyrococcus horikoshii GN=rpl24p PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 49/98 (50.00%), Postives = 71/98 (72.45%), Query Frame = -3
Query:  309 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 602
            S   RK RK  + AP  VR+ +MSAPLS +LR+KY VR++PVR  D+V+++RG +KG EGKVV+V  +++ I++E +T  KVNG+ V   I+PS V+I
Sbjct:    5 SKQPRKQRKFLYNAPLHVRQKMMSAPLSKELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVEGVTLRKVNGTEVFYPIHPSNVMI 102          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL24_PYRFU (50S ribosomal protein L24P OS=Pyrococcus furiosus GN=rpl24p PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = -3
Query:  309 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 602
            S   RK RK  + AP  VR+ LMSAPLS +LR+KY VR++PVR  D+V+++RG YKG EGKVV+V  +++ I++E  T  K NG+ V   I+PS V+I
Sbjct:    5 SKQPRKQRKFLYNAPLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMI 102          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL24_PYRKO (50S ribosomal protein L24P OS=Pyrococcus kodakaraensis GN=rpl24p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.886e-19
Identity = 46/94 (48.94%), Postives = 69/94 (73.40%), Query Frame = -3
Query:  309 RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVI 590
            RK RK  + AP  +R  +MSAPLS +LR+KY VR++P+R  D+V+V+RG +KG EGKVV+V  R++ IH+E +T +K +G+ V   ++PS V+I
Sbjct:    9 RKQRKFLYNAPLHLRGKIMSAPLSKELREKYGVRNLPIRVGDKVKVMRGDFKGVEGKVVEVDLRRYRIHVEGVTHKKTDGTEVFYPLHPSNVMI 102          
The following BLAST results are available for this feature:
BLAST of DC887722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RL26_LITLI1.018e-3570.4860S ribosomal protein L26 OS=Littorina littorea GN... [more]
RL26_SCHPO9.527e-3463.8160S ribosomal protein L26 OS=Schizosaccharomyces p... [more]
RL26_CHICK1.797e-3275.5660S ribosomal protein L26 (Fragment) OS=Gallus gal... [more]
RL26_DICDI1.521e-3163.8160S ribosomal protein L26 OS=Dictyostelium discoid... [more]
RL26_CAEEL2.595e-3160.9560S ribosomal protein L26 OS=Caenorhabditis elegan... [more]
RL26B_YEAST1.090e-2958.0060S ribosomal protein L26-B OS=Saccharomyces cerev... [more]
RL26A_YEAST1.090e-2958.0060S ribosomal protein L26-A OS=Saccharomyces cerev... [more]
RL24_PYRHO4.590e-2050.0050S ribosomal protein L24P OS=Pyrococcus horikoshi... [more]
RL24_PYRFU4.590e-2051.0250S ribosomal protein L24P OS=Pyrococcus furiosus ... [more]
RL24_PYRKO3.886e-1948.9450S ribosomal protein L24P OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionDC887722 EIC Citrus sinensis cDNA clone EIC0789 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887722 ID=DC887722; Name=DC887722; organism=Citrus sinensis; type=EST; length=622bp
CGAAACGACGAGGAGAAAATCCAAAGAAGTATCTTAAATCTCCAACATAA
GCCCATAATCGGATCCTCATGACATAACACAATAACAATAGAAATATCAT
AGTGACATTGCCAAAACAAAACATCCTAAATCCATAAATTCTATGATTAA
ACAAAAACTTTAAAAACAACCTCTTATCAAAATTAGTCAACGCTCTGCAT
AATATCCTCTGGGGTGAACTTGGTACCCTTCTCCTTGTCGGCGGCGGCAC
GTCCCTTGGCCTTGCGATCGAGCAAAGACTTCCTGTCCTTGTCCAGACGG
AGCTTGGTGATCACGACCTTTGATGGGTTGATTCCCACATTCACAGTGGA
TCCATTAACCTTCTCGCGAGTGATGCGCTCGATGTGAATGACCCACTTCC
GGCGATACACTTGAACGACTTTGCCCTCGCGCCCCTTGTAGGTCCCACGC
ACAACCTGAACCTCGTCGTCCTTGCGCACAGGCATCGACCTTACGTTGTA
CTTCTGACGGAGGTCTGTGGACAGCGGCGCGCTCATCAAGATGCGGCGCA
CGCTGGAAGGGGCGGTGAAGTGCGCCTTCCGGTTCTTACGGCGAGAGGAT
GACACCCTGGGGTTGTACTTCA
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