DC887721

Overview
NameDC887721
Unique NameDC887721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.918e-48
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.918e-48
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.918e-48
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.918e-48
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.918e-48
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 6.501e-48
Identity = 89/113 (78.76%), Postives = 104/113 (92.04%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+SAR RRR  RGL+RK  +L+K+LRKAK++APP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKDAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.471e-47
Identity = 88/113 (77.88%), Postives = 101/113 (89.38%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L  +  ARARR+  RGLKR+PM LIKKLRKAK+EA P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   40 LRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.226e-46
Identity = 86/111 (77.48%), Postives = 101/111 (90.99%), Query Frame = -3 
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            +L+ AR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE ++THLR+MII+PEM+GS++GVYNGK FNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   35 QLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEKPEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.731e-46
Identity = 86/113 (76.11%), Postives = 101/113 (89.38%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +L+ AR RRR  RGL+RK  +L+K+L KAK+EAPP EKPE V+THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEM GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:   33 LMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.657e-43
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = -3 
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L  LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   42 LVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PIG2.918e-4879.6540S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]
RS15_MOUSE2.918e-4879.6540S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]
RS15_MESAU2.918e-4879.6540S ribosomal protein S15 OS=Mesocricetus auratus ... [more]
RS15_HUMAN2.918e-4879.6540S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
RS15_CHICK2.918e-4879.6540S ribosomal protein S15 OS=Gallus gallus GN=RPS1... [more]
RS15_BOVIN6.501e-4878.7640S ribosomal protein S15 OS=Bos taurus GN=RPS15 P... [more]
RS15_PODAN2.471e-4777.8840S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_XENLA1.226e-4677.4840S ribosomal protein S15 OS=Xenopus laevis GN=rps... [more]
RS15_XIPMA2.731e-4676.1140S ribosomal protein S15 OS=Xiphophorus maculatus... [more]
RS15B_SCHPO1.657e-4374.3440S ribosomal protein S15-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionDC887721 EIC Citrus sinensis cDNA clone EIC0785 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bp
TCCCAGGTAAGGCAGGTTAAATTAATTTCCCAGAATAAGCATTACTCTTG
AGCAGAATATCCTTCAAAACTATTTTGCATCACACTCTTTCAAAAGCTTT
AATTAAAACTGAATCGACAAAAACAGGCAGGTCCAAAATCATTTTTTGGA
GGACAAAACATACCCTCCATAAGGACAGCATGCAAAATCTTCACTTCAGA
GGAATGAACCTAGAAGAGTGGGTAGCACCAATACCAGGTCTTCCGTGCTT
AACTGGCTTGTATGAGATCGAGAACTCAGCTAGATAATGTCCAATCATTT
CGGGCTTAATTTCAACTTGATTAAAGGTCTTGCCATTGTAAACACCAATT
ATACTACCGATCATTTCAGGCACAATGATCATGTTGCGAAGATGAGTCCT
AACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCCCTTTTCGCCTTGCGCA
ACTTCTTGATCAACGCCATAGGCTTCCTTTTCAACCCCCTCTGAAACCTT
CTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
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