DC887721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THEON (30S ribosomal protein S19P OS=Thermococcus onnurineus (strain NA1) GN=rps19p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 4.844e-27 Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = -3 Query: 194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529 AKL AR RR +RGL + L++K+R AK+ G+ +P+RTH R+M+I+PEM+G I VYNGK F VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 26 AKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMVILPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAIK 133
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 4.844e-27 Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = -3 Query: 194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529 AKL AR RR +RGL + L++K+R AK+ G+ +P+RTH R+MI++PEM+G I V+NGK F +EIKPEMIGHYL EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 26 AKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAVK 133
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRHO (30S ribosomal protein S19P OS=Pyrococcus horikoshii GN=rps19p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 6.326e-27 Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 LA+L AR RR +RGL + L++K+R AK+ G+ +P+RTH R+MII+PEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K Sbjct: 24 LARLLPARQRRSLRRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.409e-26 Identity = 59/112 (52.68%), Postives = 80/112 (71.43%), Query Frame = -3 Query: 194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529 AKL +R RR +RGL + L++K+R AK+ G+ +P+RTH R+MI++PEM+G I VYNGK F VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 26 AKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPGVGATRSSMFVAVK 133
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.558e-25 Identity = 55/113 (48.67%), Postives = 82/113 (72.57%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 L+KL +R RR +RGL + L++K+R AK+ G+ +P+RTH R+M+I+PEM+G +I V+NGK F V+I+ EMIGHY+ EF+++ K V+HG PG+GAT SS F+ +K Sbjct: 25 LSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPGVGATRSSMFVAIK 133
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25 Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 KLF +R RR +RG + +++K+RK K+E +P +RTH R+MI++PEM+G G++NGK F +V+I+PEMIG Y EF+ + K V+HG PG+GAT S F+PLK Sbjct: 26 KLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPGMGATRFSMFVPLK 136
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.534e-25 Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 +LF AR RR +RG + ++ K+RK +E +P +RTH R+MI++PEM+G+ G+YNG+ F +V I+PEMIG Y EF+ + + V+HG PG+GAT SS F+PLK Sbjct: 26 ELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPGMGATRSSMFVPLK 136
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.250e-24 Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = -3 Query: 194 LAKLFSARARRR----FQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 LA++ AR RR F++G + + L++K+R+A + A G+K ++THLR+ II+PEM+G I V+NGK F VEI PE IGHYL EF+++ K V+HG PG+ AT SS F+ LK Sbjct: 25 LAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPGLKATRSSMFVALK 141
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4) HSP 1 Score: 111.694 bits (278), Expect = 2.250e-24 Identity = 53/113 (46.90%), Postives = 78/113 (69.03%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 +A+L AR RR RGL + L++K R+A E + P+RTHLR+M +VPEM+G V++G+ F +V+++PEM+GHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 31 VAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_STAMF (30S ribosomal protein S19P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps19p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.939e-24 Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = -3 Query: 194 LFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 523 L AR RR +RGL + L+ K+RK +++ G+K ++TH+R+MII+PEMIG I VYNGK F V I PEMIGHYL EFS + K V+HG PG+ AT SS FI LK Sbjct: 35 LLPARQRRSLKRGLTMAQVKLLAKIRKVRQKKLTGKKAI-IKTHVRDMIILPEMIGLTIAVYNGKEFIPVRIVPEMIGHYLGEFSPTTKRVQHGEPGLKATRSSMFISLK 143 The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bpback to top |