DC887721

Overview
NameDC887721
Unique NameDC887721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THEON (30S ribosomal protein S19P OS=Thermococcus onnurineus (strain NA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.844e-27
Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = -3
Query:  194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529
            AKL  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+M+I+PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:   26 AKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMVILPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAIK 133          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.844e-27
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529
            AKL  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I V+NGK F  +EIKPEMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:   26 AKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAVK 133          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRHO (30S ribosomal protein S19P OS=Pyrococcus horikoshii GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.326e-27
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            LA+L  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:   24 LARLLPARQRRSLRRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.409e-26
Identity = 59/112 (52.68%), Postives = 80/112 (71.43%), Query Frame = -3
Query:  194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529
            AKL  +R RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:   26 AKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPGVGATRSSMFVAVK 133          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THESM (30S ribosomal protein S19P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.558e-25
Identity = 55/113 (48.67%), Postives = 82/113 (72.57%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L+KL  +R RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+M+I+PEM+G +I V+NGK F  V+I+ EMIGHY+ EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:   25 LSKLLPSRQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHSRDMVILPEMVGMMIYVHNGKEFVPVQIREEMIGHYIGEFALTRKRVQHGSPGVGATRSSMFVAIK 133          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METTH (30S ribosomal protein S19P OS=Methanobacterium thermoautotrophicum GN=rps19p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            KLF +R RR  +RG   +   +++K+RK K+E     +P  +RTH R+MI++PEM+G   G++NGK F +V+I+PEMIG Y  EF+ + K V+HG PG+GAT  S F+PLK
Sbjct:   26 KLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKTEGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHGDPGMGATRFSMFVPLK 136          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METS3 (30S ribosomal protein S19P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.534e-25
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            +LF AR RR  +RG   +   ++ K+RK  +E     +P  +RTH R+MI++PEM+G+  G+YNG+ F +V I+PEMIG Y  EF+ + + V+HG PG+GAT SS F+PLK
Sbjct:   26 ELFPARQRRSLKRGFLPRQQIVLDKMRKLNKEGSKDGRPVVIRTHCRDMIVLPEMVGTTFGIYNGQNFVEVTIEPEMIGCYFGEFAPTRQKVQHGDPGMGATRSSMFVPLK 136          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.250e-24
Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = -3
Query:  194 LAKLFSARARRR----FQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            LA++  AR RR     F++G   + + L++K+R+A + A  G+K   ++THLR+ II+PEM+G  I V+NGK F  VEI PE IGHYL EF+++ K V+HG PG+ AT SS F+ LK
Sbjct:   25 LAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPGLKATRSSMFVALK 141          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HALMA (30S ribosomal protein S19P OS=Haloarcula marismortui GN=rps19p PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 2.250e-24
Identity = 53/113 (46.90%), Postives = 78/113 (69.03%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            +A+L  AR RR   RGL  +   L++K R+A  E    +   P+RTHLR+M +VPEM+G    V++G+ F +V+++PEM+GHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   31 VAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETAND---PIRTHLRDMPVVPEMVGLTFAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_STAMF (30S ribosomal protein S19P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.939e-24
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = -3
Query:  194 LFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 523
            L  AR RR  +RGL    + L+ K+RK +++   G+K   ++TH+R+MII+PEMIG  I VYNGK F  V I PEMIGHYL EFS + K V+HG PG+ AT SS FI LK
Sbjct:   35 LLPARQRRSLKRGLTMAQVKLLAKIRKVRQKKLTGKKAI-IKTHVRDMIILPEMIGLTIAVYNGKEFIPVRIVPEMIGHYLGEFSPTTKRVQHGEPGLKATRSSMFISLK 143          
The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_THEON4.844e-2753.5730S ribosomal protein S19P OS=Thermococcus onnurin... [more]
RS19_THEGJ4.844e-2752.6830S ribosomal protein S19P OS=Thermococcus gammato... [more]
RS19_PYRHO6.326e-2754.8730S ribosomal protein S19P OS=Pyrococcus horikoshi... [more]
RS19_PYRKO1.409e-2652.6830S ribosomal protein S19P OS=Pyrococcus kodakarae... [more]
RS19_THESM1.558e-2548.6730S ribosomal protein S19P OS=Thermococcus sibiric... [more]
RS19_METTH2.035e-2547.7530S ribosomal protein S19P OS=Methanobacterium the... [more]
RS19_METS34.534e-2546.8530S ribosomal protein S19P OS=Methanobrevibacter s... [more]
RS19_THEPD2.250e-2447.8630S ribosomal protein S19P OS=Thermofilum pendens ... [more]
RS19_HALMA2.250e-2446.9030S ribosomal protein S19P OS=Haloarcula marismort... [more]
RS19_STAMF2.939e-2453.6430S ribosomal protein S19P OS=Staphylothermus mari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887721 EIC Citrus sinensis cDNA clone EIC0785 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bp
TCCCAGGTAAGGCAGGTTAAATTAATTTCCCAGAATAAGCATTACTCTTG
AGCAGAATATCCTTCAAAACTATTTTGCATCACACTCTTTCAAAAGCTTT
AATTAAAACTGAATCGACAAAAACAGGCAGGTCCAAAATCATTTTTTGGA
GGACAAAACATACCCTCCATAAGGACAGCATGCAAAATCTTCACTTCAGA
GGAATGAACCTAGAAGAGTGGGTAGCACCAATACCAGGTCTTCCGTGCTT
AACTGGCTTGTATGAGATCGAGAACTCAGCTAGATAATGTCCAATCATTT
CGGGCTTAATTTCAACTTGATTAAAGGTCTTGCCATTGTAAACACCAATT
ATACTACCGATCATTTCAGGCACAATGATCATGTTGCGAAGATGAGTCCT
AACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCCCTTTTCGCCTTGCGCA
ACTTCTTGATCAACGCCATAGGCTTCCTTTTCAACCCCCTCTGAAACCTT
CTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
back to top