DC887721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.905e-23 Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 KL AR RR ++G LI+K+RK +R++ + +P++TH+R+++I+PEM+G VYNGK F + ++ PEMIGHYL EFSI + V+HG PG+ AT SS F+ +K Sbjct: 32 KLLPARQRRSLRKGFTPSERTLIEKIRKIRRDS---KADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPGLKATRSSLFMAMK 139
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23 Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 KL AR RR RGL L+ K+RKA+++ G+K V+TH+R+MII+PEM+G I VYNGK F V+I PEMIGHYL EFS + K V+HG PG+ AT S+ + LK Sbjct: 35 KLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKVV-VKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRAE (30S ribosomal protein S19P OS=Pyrobaculum aerophilum GN=rps19p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23 Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 KL AR RR +RGLK + L++K+RKAKR A G+K +RTH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ K V+HG PG+ AT SS I K Sbjct: 49 KLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IRTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 158
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23 Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 LA + +R RR +RGL + L+ K+RK K + +RTH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYL EF+++ + V+HG+PG GAT SS+F+PLK Sbjct: 24 LANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPGKGATRSSKFVPLK 132
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23 Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 KL AR RR +RGLK + L++K+RKAKR A G+K ++TH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ K V+HG PG+ AT SS I K Sbjct: 49 KLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK 158
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23 Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 KL +R RR +RG L++K+RK +RE G+ + ++TH+RN++I+PE+IG + VYNGK F + + PEMIGHYL E+SI+ K V+HG PG+ AT SS F+ +K Sbjct: 32 KLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMK 139
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23 Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 KL AR RR +RGLK + L++K+RKAKR A G+K ++TH R+MII+PEM+G I VYNG T+ V I P IGHYL EF+++ K V+HG PG+ AT SS I K Sbjct: 50 KLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 159
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23 Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 +A+L AR RR RGL + ++ + R++ E P+RTHLR+M ++PE +G VY G+ F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 31 VAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23 Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 +A+L AR RR RGL + ++ + R++ E P+RTHLR+M ++PE +G VY G+ F +VE++PEMIGHYL EF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 31 VAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_IGNH4 (30S ribosomal protein S19P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps19p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22 Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 +L AR RR +RG L++K+ KA++E G+K + +RTH+R+M+I+P M+G I VYNGK F V+I PEMIGHYL EFS + VKHG PG+ AT SS F+ K Sbjct: 30 ELLPARQRRSLKRGFNDAQRRLLEKVLKARKEMEKGKKVK-IRTHVRDMVILPIMVGLTIEVYNGKEFVPVKIVPEMIGHYLGEFSHTTAVVKHGEPGLKATRSSLFVAAK 139 The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bpback to top |