DC887721

Overview
NameDC887721
Unique NameDC887721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METS5 (30S ribosomal protein S19P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.905e-23
Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            KL  AR RR  ++G       LI+K+RK +R++   +  +P++TH+R+++I+PEM+G    VYNGK F + ++ PEMIGHYL EFSI  + V+HG PG+ AT SS F+ +K
Sbjct:   32 KLLPARQRRSLRKGFTPSERTLIEKIRKIRRDS---KADKPIKTHVRSLVILPEMVGLKFAVYNGKQFVEFQVVPEMIGHYLGEFSIPIQKVEHGEPGLKATRSSLFMAMK 139          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HYPBU (30S ribosomal protein S19P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps19p PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            KL  AR RR   RGL      L+ K+RKA+++   G+K   V+TH+R+MII+PEM+G  I VYNGK F  V+I PEMIGHYL EFS + K V+HG PG+ AT S+  + LK
Sbjct:   35 KLLPARQRRSLLRGLTDAQRRLLWKIRKARQKMLQGKKVV-VKTHVRDMIILPEMVGLTIAVYNGKEFIPVKITPEMIGHYLGEFSPTCKQVQHGEPGLKATRSTLHVALK 144          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRAE (30S ribosomal protein S19P OS=Pyrobaculum aerophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   +RTH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   49 KLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IRTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 158          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            LA +  +R RR  +RGL  +   L+ K+RK K         + +RTH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYL EF+++ + V+HG+PG GAT SS+F+PLK
Sbjct:   24 LANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPGKGATRSSKFVPLK 132          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   49 KLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK 158          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_SULSO (30S ribosomal protein S19P OS=Sulfolobus solfataricus GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            KL  +R RR  +RG       L++K+RK +RE   G+  + ++TH+RN++I+PE+IG  + VYNGK F +  + PEMIGHYL E+SI+ K V+HG PG+ AT SS F+ +K
Sbjct:   32 KLLPSRQRRSLKRGFTDAQRHLLEKVRKYRRE---GKFNKTIKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKATRSSLFLAMK 139          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   50 KLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 159          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            +A+L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   31 VAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.238e-23
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            +A+L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   31 VAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_IGNH4 (30S ribosomal protein S19P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            +L  AR RR  +RG       L++K+ KA++E   G+K + +RTH+R+M+I+P M+G  I VYNGK F  V+I PEMIGHYL EFS +   VKHG PG+ AT SS F+  K
Sbjct:   30 ELLPARQRRSLKRGFNDAQRRLLEKVLKARKEMEKGKKVK-IRTHVRDMVILPIMVGLTIEVYNGKEFVPVKIVPEMIGHYLGEFSHTTAVVKHGEPGLKATRSSLFVAAK 139          
The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METS51.905e-2345.9530S ribosomal protein S19P OS=Metallosphaera sedul... [more]
RS19_HYPBU2.488e-2352.2530S ribosomal protein S19P OS=Hyperthermus butylic... [more]
RS19_PYRAE4.243e-2353.1530S ribosomal protein S19P OS=Pyrobaculum aerophil... [more]
RS19_KORCO4.243e-2348.6730S ribosomal protein S19P OS=Korarchaeum cryptofi... [more]
RS19_THENV7.238e-2352.2530S ribosomal protein S19P OS=Thermoproteus neutro... [more]
RS19_SULSO7.238e-2346.8530S ribosomal protein S19P OS=Sulfolobus solfatari... [more]
RS19_PYRAR7.238e-2352.2530S ribosomal protein S19P OS=Pyrobaculum arsenati... [more]
RS19_HALSA7.238e-2345.1330S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALS37.238e-2345.1330S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_IGNH41.235e-2249.5530S ribosomal protein S19P OS=Ignicoccus hospitali... [more]

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Properties
Property NameValue
Genbank descriptionDC887721 EIC Citrus sinensis cDNA clone EIC0785 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bp
TCCCAGGTAAGGCAGGTTAAATTAATTTCCCAGAATAAGCATTACTCTTG
AGCAGAATATCCTTCAAAACTATTTTGCATCACACTCTTTCAAAAGCTTT
AATTAAAACTGAATCGACAAAAACAGGCAGGTCCAAAATCATTTTTTGGA
GGACAAAACATACCCTCCATAAGGACAGCATGCAAAATCTTCACTTCAGA
GGAATGAACCTAGAAGAGTGGGTAGCACCAATACCAGGTCTTCCGTGCTT
AACTGGCTTGTATGAGATCGAGAACTCAGCTAGATAATGTCCAATCATTT
CGGGCTTAATTTCAACTTGATTAAAGGTCTTGCCATTGTAAACACCAATT
ATACTACCGATCATTTCAGGCACAATGATCATGTTGCGAAGATGAGTCCT
AACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCCCTTTTCGCCTTGCGCA
ACTTCTTGATCAACGCCATAGGCTTCCTTTTCAACCCCCTCTGAAACCTT
CTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
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