DC887721

Overview
NameDC887721
Unique NameDC887721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21
Identity = 49/113 (43.36%), Postives = 75/113 (66.37%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L +LF+AR RR   RG+      LI++++ AK     G+   P++TH+R++II+P M+   + V++GK F  V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK
Sbjct:   23 LFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.972e-21
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            ++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   51 EIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.848e-21
Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            ++  +R RR   RG+  K   L+ K++KA+R    G++   +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   51 EIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.156e-20
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            ++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F  V +  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   51 EIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.509e-20
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            +L  +R RR  +RG   +   ++ K+ K K       +P  ++TH R+MI++P M+G   G+YNG+ F +V I+PEMIG Y  EF+ +   V+HG PG+GAT SS F+PLK
Sbjct:   26 ELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.971e-20
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            ++  +R RR   RG+  K   L+ K++KA+R    G+    +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   51 EIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526
            ++  AR RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG  I +Y GK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   50 EIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = -3
Query:  194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529
            A+L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I V+NGK F  VE++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:   35 AELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            L  +  +RARR+  RG       L+  +R              +RTH R+MII+PEMIG  I +YNGK F +VE++PE + HYL EF+++ + V HG  GIGAT SS+F+PLK
Sbjct:   34 LLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137          
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532
            +A L  AR RR+ +R    +   L+  ++  + +         ++THLR+MII+PEM+G    ++NGK +  VE  PEM+GHYL EF+++   V HG  GIGAT  S+++PLK
Sbjct:   37 VAALLPARQRRKIKREFGEEHQKLLNAVKAGETK---------IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAGIGATRGSKYVPLK 140          
The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_NITMS2.328e-2143.3630S ribosomal protein S19P OS=Nitrosopumilus marit... [more]
RS19_METM73.972e-2139.6430S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM58.848e-2139.6430S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM61.156e-2040.5430S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METST1.509e-2042.3430S ribosomal protein S19P OS=Methanosphaera stadt... [more]
RS19_METMP1.971e-2039.6430S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METVS2.574e-2039.6430S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METMA3.717e-1943.7530S ribosomal protein S19P OS=Methanosarcina mazei... [more]
RS19_METHJ4.855e-1944.2530S ribosomal protein S19P OS=Methanospirillum hun... [more]
RS19_UNCMA6.341e-1939.8230S ribosomal protein S19P OS=Uncultured methanoge... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887721 EIC Citrus sinensis cDNA clone EIC0785 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bp
TCCCAGGTAAGGCAGGTTAAATTAATTTCCCAGAATAAGCATTACTCTTG
AGCAGAATATCCTTCAAAACTATTTTGCATCACACTCTTTCAAAAGCTTT
AATTAAAACTGAATCGACAAAAACAGGCAGGTCCAAAATCATTTTTTGGA
GGACAAAACATACCCTCCATAAGGACAGCATGCAAAATCTTCACTTCAGA
GGAATGAACCTAGAAGAGTGGGTAGCACCAATACCAGGTCTTCCGTGCTT
AACTGGCTTGTATGAGATCGAGAACTCAGCTAGATAATGTCCAATCATTT
CGGGCTTAATTTCAACTTGATTAAAGGTCTTGCCATTGTAAACACCAATT
ATACTACCGATCATTTCAGGCACAATGATCATGTTGCGAAGATGAGTCCT
AACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCCCTTTTCGCCTTGCGCA
ACTTCTTGATCAACGCCATAGGCTTCCTTTTCAACCCCCTCTGAAACCTT
CTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
back to top