DC887721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21 Identity = 49/113 (43.36%), Postives = 75/113 (66.37%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 L +LF+AR RR RG+ LI++++ AK G+ P++TH+R++II+P M+ + V++GK F V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK Sbjct: 23 LFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.972e-21 Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 ++ +R RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 51 EIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 8.848e-21 Identity = 44/111 (39.64%), Postives = 70/111 (63.06%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 ++ +R RR RG+ K L+ K++KA+R G++ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 51 EIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.156e-20 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 ++ +R RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG G+YNGK F V + E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 51 EIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.509e-20 Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 +L +R RR +RG + ++ K+ K K +P ++TH R+MI++P M+G G+YNG+ F +V I+PEMIG Y EF+ + V+HG PG+GAT SS F+PLK Sbjct: 26 ELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.971e-20 Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 ++ +R RR RG+ K L+ K++KA+R G+ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 51 EIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20 Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = -3 Query: 194 KLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 526 ++ AR RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG I +Y GK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 50 EIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.717e-19 Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = -3 Query: 194 AKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 529 A+L +R RR +RG ++ + ++ K+ +RTH R+MII+PEMIG I V+NGK F VE++PEMIGH EF+ + V HG G+GAT SS+F+PLK Sbjct: 35 AELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19 Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 L + +RARR+ RG L+ +R +RTH R+MII+PEMIG I +YNGK F +VE++PE + HYL EF+++ + V HG GIGAT SS+F+PLK Sbjct: 34 LLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137
BLAST of DC887721 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19 Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = -3 Query: 194 LAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 532 +A L AR RR+ +R + L+ ++ + + ++THLR+MII+PEM+G ++NGK + VE PEM+GHYL EF+++ V HG GIGAT S+++PLK Sbjct: 37 VAALLPARQRRKIKREFGEEHQKLLNAVKAGETK---------IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAGIGATRGSKYVPLK 140 The following BLAST results are available for this feature:
BLAST of DC887721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887721 ID=DC887721; Name=DC887721; organism=Citrus sinensis; type=EST; length=534bpback to top |