DC887711

Overview
NameDC887711
Unique NameDC887711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_BOVIN (40S ribosomal protein S29 OS=Bos taurus GN=RPS29 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.760e-16
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29A_YEAST (40S ribosomal protein S29-A OS=Saccharomyces cerevisiae GN=RPS29A PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.144e-15
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            M H NVW SHP+ YG GSR CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct:    1 MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR 56          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_CULQU (40S ribosomal protein S29 OS=Culex quinquefasciatus GN=RpS29 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MG +++W SHP+ YG GSR CR C N H +IRKYGL  CRQCFR  AK+IGF K
Sbjct:    1 MGFADLWYSHPRKYGQGSRFCRACSNNHGMIRKYGLNICRQCFREYAKDIGFRK 54          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_DROME (40S ribosomal protein S29 OS=Drosophila melanogaster GN=RpS29 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.416e-15
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MG + +W SHP+ YG GSR CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_CANGA (40S ribosomal protein S29 OS=Candida glabrata GN=RPS29 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.416e-15
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            M H NVW SHP+ +G GSR CRVC +   +IRKY L  CRQCFR  A +IGF KYR
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLIRKYDLNICRQCFRERASDIGFNKYR 56          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29B_YEAST (40S ribosomal protein S29-B OS=Saccharomyces cerevisiae GN=RPS29B PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            M H NVW SHP+ +G GSR CRVC +   ++RKY L  CRQCFR  A +IGF KYR
Sbjct:    1 MAHENVWFSHPRRFGKGSRQCRVCSSHTGLVRKYDLNICRQCFREKANDIGFHKYR 56          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_DICDI (40S ribosomal protein S29 OS=Dictyostelium discoideum GN=rps29 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.265e-14
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 2
Query:   92 VWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            +W +HP+ +GPGSR CR CGN H IIRKY L  CR+CFR++A+ IGF KYR
Sbjct:    5 LWLTHPRNFGPGSRTCRKCGNHHGIIRKYDLNMCRRCFRTDAEAIGFNKYR 55          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_PIG (40S ribosomal protein S29 OS=Sus scrofa GN=RPS29 PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MG    + SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGPQGFYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_DEBHA (40S ribosomal protein S29 OS=Debaryomyces hansenii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.807e-14
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            M H +VW SHP+ +G GSR CRVC +   +IRKY L  CRQCFR  A +IGF K+R
Sbjct:    1 MAHESVWFSHPRNFGKGSRQCRVCSSHSGLIRKYDLNICRQCFRERASDIGFNKFR 56          
BLAST of DC887711 vs. ExPASy Swiss-Prot
Match: RS29_KLULA (40S ribosomal protein S29 OS=Kluyveromyces lactis GN=RPS29 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            M H NVW SHP+ +G GSR CR+ G+   +IRKYGL   RQ FR  A +IGF KYR
Sbjct:    1 MAHENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR 56          
The following BLAST results are available for this feature:
BLAST of DC887711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_BOVIN8.760e-1662.9640S ribosomal protein S29 OS=Bos taurus GN=RPS29 P... [more]
RS29A_YEAST1.144e-1562.5040S ribosomal protein S29-A OS=Saccharomyces cerev... [more]
RS29_CULQU4.347e-1562.9640S ribosomal protein S29 OS=Culex quinquefasciatu... [more]
RS29_DROME7.416e-1561.1140S ribosomal protein S29 OS=Drosophila melanogast... [more]
RS29_CANGA7.416e-1560.7140S ribosomal protein S29 OS=Candida glabrata GN=R... [more]
RS29B_YEAST9.685e-1558.9340S ribosomal protein S29-B OS=Saccharomyces cerev... [more]
RS29_DICDI1.265e-1462.7540S ribosomal protein S29 OS=Dictyostelium discoid... [more]
RS29_PIG2.158e-1461.1140S ribosomal protein S29 OS=Sus scrofa GN=RPS29 P... [more]
RS29_DEBHA4.807e-1457.1440S ribosomal protein S29 OS=Debaryomyces hansenii... [more]
RS29_KLULA5.314e-1357.1440S ribosomal protein S29 OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionDC887711 EIC Citrus sinensis cDNA clone EIC0763 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887711 ID=DC887711; Name=DC887711; organism=Citrus sinensis; type=EST; length=484bp
GACAATTAGCGTTTGCATTGCGGAGAAGAGTGCGGCAGCAGAGTAGAGCA
GAGCAGGACAGGACAGGAGAGAAGAGATGGGTCACTCCAACGTATGGAAT
TCGCATCCCAAGACCTACGGCCCTGGATCTCGTGCTTGCCGCGTTTGCGG
GAACCCTCATGCGATTATCAGAAAGTACGGCCTCATGTGCTGCAGGCAGT
GCTTCCGCAGCAACGCCAAGGAGATCGGTTTCGTCAAGTACCGCTGAAGA
AGATGGCTGTCAAGGCTTTGCAGTGGACTGTGGAGCATACCTAGGAATGG
AGAAATTCTCAGTTTTCATGTGATTTCTTTTTAGTTTTTCACAAGTAGCA
TAAAGCTTGTGAATCAATTAGAGCTTGAACTTTGTAGATGGATTTCTTTG
CTGTCTTAATATGACTGCCAATCTTATTACTTTAATGTTCTCTTATGTAT
GGAGTGCAAGAGTGTCTTATAGTTTCTCTGCTTG
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