DC887710

Overview
NameDC887710
Unique NameDC887710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.673e-41
Identity = 77/115 (66.96%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  103 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 2.673e-41
Identity = 77/115 (66.96%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  103 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.779e-41
Identity = 72/115 (62.61%), Postives = 100/115 (86.96%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            L+KKY AFLASES+++Q+P+LLGPGLNK GKFPTL+TH E + SK+N+ K+TVKFQLKKVLC+ VAVG++ + E+++  N+  S+NFLVSLLKK WQN++ LY+K++MGPS+R++
Sbjct:  103 LSKKYDAFLASESILRQVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVKTSMGPSHRVY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 3.861e-40
Identity = 75/115 (65.22%), Postives = 99/115 (86.09%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AFLASES+IKQIPR+LGPGLNKAGKFP+ +TH E++ +KV+E K+T+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  103 LAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.861e-40
Identity = 76/115 (66.09%), Postives = 99/115 (86.09%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAK Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKNWQNVR L +KSTMG   R++
Sbjct:  102 LAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.622e-38
Identity = 73/115 (63.48%), Postives = 96/115 (83.48%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LA+KY AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+TM P  R++
Sbjct:  103 LARKYDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.622e-38
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LA+ YHAFLAS+SVIKQIPRLLGPGLNKAGKFP  +   ++LE  V +TK ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKNWQNVRCLY+KSTMG   RI+
Sbjct:  101 LAQAYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.719e-38
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L SKV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  103 LAKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL1B_SCHPO (60S ribosomal protein L1-B OS=Schizosaccharomyces pombe GN=rpl1b PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.050e-38
Identity = 73/115 (63.48%), Postives = 95/115 (82.61%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            LAKKY AF+ASE +IKQIPRLLGPGL+KAGKFP+ V+H + L  K+ E K+T+KFQLKKVLC+GVAVG++ M E+Q+  N+ ++VNFLVSLLKK WQN+  L +KSTMG  +R++
Sbjct:  102 LAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
[Close]
BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.059e-37
Identity = 73/115 (63.48%), Postives = 94/115 (81.74%), Query Frame = -3 
Query:  195 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 539
            L+KKY+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  103 LSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217
The following BLAST results are available for this feature:
BLAST of DC887710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL10A_HUMAN2.673e-4166.9660S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN2.673e-4166.9660S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_DICDI7.779e-4162.6160S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_MACFA3.861e-4065.2260S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_CAEEL3.861e-4066.0960S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_NEUCR1.622e-3863.4860S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_CHLRE1.622e-3868.7060S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_ASHGO4.719e-3865.2260S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL1B_SCHPO8.050e-3863.4860S ribosomal protein L1-B OS=Schizosaccharomyces ... [more]
RL10A_CANGA3.059e-3763.4860S ribosomal protein L10a OS=Candida glabrata GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887710 EIC Citrus sinensis cDNA clone EIC0762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887710 ID=DC887710; Name=DC887710; organism=Citrus sinensis; type=EST; length=541bp
CATTCACTCTCTCCACAAAAAAATTCGTACAAGTCTACCATATTATAAGA
TTACTAGTGCATTAAATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATT
GCAGGTTGTGACCATTCAAAGAAAGACATTTTGGGTATAATAAGATCACA
CTAGGTTTTCCCTACAAAACTCCAACATAAAGCAGAATTTCTTAAAAGAT
GCGGTTTGAAGGACCCATGGTACTCTTCAGATAGAGGCACCTGACATTCT
GCCAGTTTTTCTTCAACAATGAGACAAGGAAGTTAACACTCATTTGAACA
TTCTGGAAGATCTGCTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCC
CATGCAAAGCACCTTCTTCAATTGGAACTTCACTGTTGCCTTAGTCTCGT
TGACTTTGGACTCCAGGGATTCTTGGTGAGTAACAAGGGTAGGGAACTTT
CCTGCCTTGTTGAGACCAGGACCCAACAAACGAGGAATCTGCTTGATGAC
AGACTCTGATGCCAAGAAAGCATGATATTTCTTGGCAAGTT
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