DC887710

Overview
NameDC887710
Unique NameDC887710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DC887710 vs. ExPASy Swiss-Prot
Match: RL1_PYRKO (50S ribosomal protein L1P OS=Pyrococcus kodakaraensis GN=rpl1p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 36/115 (31.30%), Postives = 67/115 (58.26%), Query Frame = -3 
Query:  198 LAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH-QESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 539
            LAKKY  F+A+  ++ +I R LG  L    K P +V     +LE  V + K TV+ QLK    +   +G   M+++++ +N +  +N +++ L++    V+ +Y+K+TMGP+ ++
Sbjct:  100 LAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQLKNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKLERGENQVKSVYIKTTMGPAVKV 214
The following BLAST results are available for this feature:
BLAST of DC887710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL1_PYRKO4.918e-1131.3050S ribosomal protein L1P OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionDC887710 EIC Citrus sinensis cDNA clone EIC0762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887710 ID=DC887710; Name=DC887710; organism=Citrus sinensis; type=EST; length=541bp
CATTCACTCTCTCCACAAAAAAATTCGTACAAGTCTACCATATTATAAGA
TTACTAGTGCATTAAATTCAGAAAAGAAAAAGAAAAAGAAAAAGAAAATT
GCAGGTTGTGACCATTCAAAGAAAGACATTTTGGGTATAATAAGATCACA
CTAGGTTTTCCCTACAAAACTCCAACATAAAGCAGAATTTCTTAAAAGAT
GCGGTTTGAAGGACCCATGGTACTCTTCAGATAGAGGCACCTGACATTCT
GCCAGTTTTTCTTCAACAATGAGACAAGGAAGTTAACACTCATTTGAACA
TTCTGGAAGATCTGCTTCTCCTCCATTGAAAGGTTTCCAACAGCAACTCC
CATGCAAAGCACCTTCTTCAATTGGAACTTCACTGTTGCCTTAGTCTCGT
TGACTTTGGACTCCAGGGATTCTTGGTGAGTAACAAGGGTAGGGAACTTT
CCTGCCTTGTTGAGACCAGGACCCAACAAACGAGGAATCTGCTTGATGAC
AGACTCTGATGCCAAGAAAGCATGATATTTCTTGGCAAGTT
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