DC887700

Overview
NameDC887700
Unique NameDC887700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BORPA (10 kDa chaperonin OS=Bordetella parapertussis GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 34/92 (36.96%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +RV+V+++    KT +GI++P+ ++ K + G+V+AVGPG + ++G  +PV  K GD VL   Y G  VK+  ++  + R++EIL  +
Sbjct:    3 LRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGPGKKTEDGKILPVDLKAGDKVLFGKYAGQTVKVDGEELLVIREDEILAVI 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BORBR (10 kDa chaperonin OS=Bordetella bronchiseptica GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 34/92 (36.96%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +RV+V+++    KT +GI++P+ ++ K + G+V+AVGPG + ++G  +PV  K GD VL   Y G  VK+  ++  + R++EIL  +
Sbjct:    3 LRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGPGKKTEDGKILPVDLKAGDKVLFGKYAGQTVKVDGEELLVIREDEILAVI 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH101_RHOPA (10 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groS1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV+V++I   +KT  GI++P+ +  K   G+VIAVGPG RD+ G   P+  K GD VL   + G  +KL  ++  + ++ +I+G +
Sbjct:    8 PLHDRVVVKRIDAETKTKGGIIIPDSAKEKPQEGQVIAVGPGGRDETGKLTPIDVKVGDRVLFGKWSGTEIKLDGEELLIMKESDIMGVV 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH101_BRAJA (10 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groS1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RVLV +I    KT  GI++P+ +  K   G++IA G G R+++G  IP+  K GD VL   + G  VK+  +DY + ++ ++LG +
Sbjct:    5 PLHDRVLVRRIDAEEKTAGGIIIPDTAKEKPQEGEIIAAGSGGRNEQGQLIPIDVKPGDRVLFGKWSGTEVKIDGQDYLIMKESDLLGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_TREPR (10 kDa chaperonin OS=Tremblaya princeps GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 31/93 (33.33%), Postives = 59/93 (63.44%), Query Frame = -3
Query:  101 RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 376
            ++ P  +RV+V++    +KT  GI++P+ ++ K + G V+A+GPG +D EG  +P+  + GD VL   Y G  +K+ ++D  + R+E+I+  +
Sbjct:    3 KIRPLGDRVVVKRSEDETKTPCGIVIPDSAAEKQDQGTVVALGPGKKDSEGARVPMEVRLGDRVLFGKYAGQSIKVDDEDLMVMREEDIVAVI 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_GEOBB (10 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +R++V+++   + T  G+ +PE +  K   G+V+AVG G R ++G   P+  K GD VL   Y G  VKL  +D+ + R+++ILG +
Sbjct:    3 LRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGEDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH101_RHIME (10 kDa chaperonin 1 OS=Rhizobium meliloti GN=groS1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 30/90 (33.33%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV+V ++    KT  GI++P+ +  K   G+++AVG GARD+ G  +P+  K GD +L   + G  VK+  +D  + ++ +I+G +
Sbjct:    8 PLHDRVVVRRVESEEKTKGGIIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGDRILFGKWSGTEVKINGEDLLIMKEADIMGVI 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_RALME (10 kDa chaperonin OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 33/93 (35.48%), Postives = 61/93 (65.59%), Query Frame = -3
Query:   98 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 373
            L P  +RV+V+++   +KT +GI++P+ ++ K + G+V+A+GPG +D +GN I +  K GD VL   Y G  VK+  ++  + R+E+I+  ++
Sbjct:    3 LRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVVN 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_RALEJ (10 kDa chaperonin OS=Ralstonia eutropha (strain JMP134) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 33/93 (35.48%), Postives = 61/93 (65.59%), Query Frame = -3
Query:   98 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 373
            L P  +RV+V+++   +KT +GI++P+ ++ K + G+V+A+GPG +D +GN I +  K GD VL   Y G  VK+  ++  + R+E+I+  ++
Sbjct:    3 LRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVVN 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_PROAC (10 kDa chaperonin OS=Propionibacterium acnes GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = -3
Query:  101 MAKRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 385
            MA  + P  +RVLV+ +     T +G+++P+ +  K   GKVI+ GPG  D +G  +P+  KEGD V+   YGG  VK   ++Y L    +IL  +
Sbjct:    1 MATTIKPLEDRVLVQPLEAEQTTASGLVIPDTAKEKPQEGKVISAGPGRVDDKGTRVPMDVKEGDVVIFSKYGGTEVKYDGQEYLLLNARDILAVV 96          
The following BLAST results are available for this feature:
BLAST of DC887700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CH10_BORPA2.385e-1136.9610 kDa chaperonin OS=Bordetella parapertussis GN=g... [more]
CH10_BORBR2.385e-1136.9610 kDa chaperonin OS=Bordetella bronchiseptica GN=... [more]
CH101_RHOPA2.385e-1136.6710 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH101_BRAJA2.385e-1136.6710 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH10_TREPR3.115e-1133.3310 kDa chaperonin OS=Tremblaya princeps GN=groS PE... [more]
CH10_GEOBB3.115e-1135.8710 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH101_RHIME3.115e-1133.3310 kDa chaperonin 1 OS=Rhizobium meliloti GN=groS1... [more]
CH10_RALME4.069e-1135.4810 kDa chaperonin OS=Ralstonia metallidurans (stra... [more]
CH10_RALEJ4.069e-1135.4810 kDa chaperonin OS=Ralstonia eutropha (strain JM... [more]
CH10_PROAC4.069e-1136.4610 kDa chaperonin OS=Propionibacterium acnes GN=gr... [more]

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Properties
Property NameValue
Genbank descriptionDC887700 EIC Citrus sinensis cDNA clone EIC0748 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887700 ID=DC887700; Name=DC887700; organism=Citrus sinensis; type=EST; length=450bp
ACAACATTAAATCAAATTCCTCAGACAATTAGTCTGTTACATTCGTTTTA
AAACAACCATAATTCCAACAATACCCATTCAGCTCAATGTACTAGTCATG
CAGAGTACCCAAAATTTCCTCGTCCCTATACAAATGGTAGTCTTTCTCAC
CGAGCTTGACATGATCGCCACCATAATTCGGTAGAAGAACGGTGTCACCT
TCCTTGAAGGCCACCGGAATGGTATTCCCCTCCTTGTCACGCGCACCCGG
GCCCACAGCAATCACTTTCCCAGAGTTCAGCTTGCTGGACTTTTCAGGGA
GGAGAATCCCGGCATTGGTTTTGGAAGGAGGTACGATTTTCTCGACGAGA
ACACGGTTCAAAGTTGGGATCAATCGCTTCGCCATCGCTTTGCTTTCTCT
GCAAAAATTAGGGCCTTTGGGACAGTGTTGCCACTGAAGAATGACGGGGT
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