DC887657

Overview
NameDC887657
Unique NameDC887657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 32/71 (45.07%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S +ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF +Q  +         +++DD+VP+LV
Sbjct:   76 ASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQFPRQVLDNKAPKAEDIDEEDDDVPDLV 146          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: NACB_SCLS1 (Nascent polypeptide-associated complex subunit beta OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = -3
Query:  353 ANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 553
            +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       E+DDD++P+LV
Sbjct:   83 SNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKAEGGEEKKDDEEDDDDIPDLV 149          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED--DDDEVPELV 565
            +S  +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G       +D  DDD++PELV
Sbjct:   76 ASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKEKGEDGDKKDDDDEDDDDIPELV 148          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: NACB_NEOFI (Nascent polypeptide-associated complex subunit beta OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S  +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     AGT     +++D+D++P+LV
Sbjct:  105 ASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQAGTEG--KKDEDEDDIPDLV 173          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: NACB_ASPTN (Nascent polypeptide-associated complex subunit beta OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S  +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV
Sbjct:   88 ASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDEEDDIPDLV 157          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.508e-11
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S  +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++D++D++P+LV
Sbjct:   76 ASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGADGKKDDEEDDIPDLV 145          
The following BLAST results are available for this feature:
BLAST of DC887657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
BT3L4_DANRE2.581e-1145.07Transcription factor BTF3 homolog 4 OS=Danio rerio... [more]
NACB_SCLS15.749e-1144.78Nascent polypeptide-associated complex subunit bet... [more]
NACB_PHANO7.508e-1143.84Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEOFI7.508e-1143.66Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPTN7.508e-1143.66Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPNC7.508e-1143.66Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionDC887657 EIC Citrus sinensis cDNA clone EIC0686 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887657 ID=DC887657; Name=DC887657; organism=Citrus sinensis; type=EST; length=579bp
GCAATTTTAGCCGCCTGTTTCATTGAAGAGCAACCGATCCGACAACATCA
GACTTACAACAAAATGCACAATAGAAAGCCATTGCAACAGTGCCTCTGGA
TTCTGAAAGAGTAAAAGGGTTTTCACTGGTTTCACTGGAGCAAAACATTG
AATTAAAAAGTAACAATATCTAGTGTCACAGGGNAGAATCAGATAAAACA
AGAGAAAGTTGACTCGGAAAAGTAAAATAAAAACTCAAAAAACATAGAAA
ATATATAGAATAACACAAAGTCCCTCTAGATAAAACTCTCTAAGAAGCAG
CGTCAGGTTTCTCTGTTTTCTCCTCTGCGGCAGCTTCAAACGTCTCGCCT
GCCACAAGCTCTGGGACCTCATCGTCGTCGTCCTCTTGAGTCGTGGGTGC
ACCAGTTCCTGCATTAGGTGCTTGCTTCTGAAACTGCTCCGCCAACTTCC
TCAGGTTGTCCAAATTATCTGGCCCCAATTGATTGATAATTCCAGGGAGA
ATATCCTGCAACTTCTTGGTTTGTGGGGCACCACTAACTACCCATGTGTT
GGCAGCNATTGAGCTTGTACTTTGGGATT
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