DC887651

Overview
NameDC887651
Unique NameDC887651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = -2
Query:  162 DSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 443
            D+RVRR+FKG  LMPNIG GS+K+TRH LP GFKKF+VHN +ELE+L+M NR YC EIAH VS++KRKEIVERA QL I +TN   RLRSQE+E
Sbjct:   41 DNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = -2
Query:  162 DSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 443
            D+RVRR+FKG  LMPNIG GS+K+TRH LP GFKKF+VHN +ELE+L+M NR YC EIAH VS++KRKEIVERA QL I +TN   RLRSQE+E
Sbjct:   41 DNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = -2
Query:  162 DSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 443
            D+RVRR+FKG  LMPNIG GS+K+TRH LP GFKKF+VHN +ELE+L+M NR YC EIAH VS++KRKEIVERA QL I +TN   RLRSQE+E
Sbjct:   41 DNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.672e-31
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = -2
Query:  162 DSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 443
            D+RVRR+FKG  LMPNIG GS+KKTRH LP GF+K +VHN KELE+LMM NR +CAEIAH  S++KRK IVERA QL I VT   ARLRSQE+E
Sbjct:   41 DNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          

HSP 2 Score: 23.0978 bits (48), Expect = 3.672e-31
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = -1
Query:  448 VKENWRRPKG 477
            +K NWR+PKG
Sbjct:   30 LKRNWRKPKG 39          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.228e-27
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = -2
Query:  162 RVXDSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R  D+RVRR+FKG  LMPNIG  S+KKT+H L +GF+KF+VHN KE E+L+M N++Y AEIAH+VS++ RK IVERAAQL I VTN   RL S+E+E
Sbjct:   39 RGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          

HSP 2 Score: 22.7126 bits (47), Expect = 2.228e-27
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = -1
Query:  448 ISVKENWRRPKG 483
            + +K NWR+P+G
Sbjct:   29 VKIKWNWRKPRG 40          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.563e-25
Identity = 53/91 (58.24%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  171 DSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQ 443
            D+RVRR+F+G   MP+IG GS+KKTRH +P+G K F+V N K++ELL+MHN+TY AEIAH+VS+RKR EI+ RA QL + VTN  A++ ++
Sbjct:   40 DNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.758e-24
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = -2
Query:  168 RVXDSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQE 452
            R  DS VRR+F+G   MP IG G++KKTR+ +PNG K F+V N  ++ELL+MHN+TY AEIA +VS RKR EIVE+A  L + VTN  A++RSQE
Sbjct:   33 RGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          

HSP 2 Score: 20.4014 bits (41), Expect = 2.758e-24
Identity = 6/10 (60.00%), Postives = 9/10 (90.00%), Query Frame = -1
Query:  448 VKENWRRPKG 477
            V E+WR+P+G
Sbjct:   25 VGESWRKPRG 34          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.589e-24
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = -2
Query:  168 RVXDSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQE 452
            R  DS VRR+F+G   MP IG G++KKTR+ +PNG K F+V N  ++ELL+MHN+TY AEIA +VS RKR EIVE+A  L + VTN  A++RSQE
Sbjct:   33 RGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          

HSP 2 Score: 20.4014 bits (41), Expect = 3.589e-24
Identity = 6/10 (60.00%), Postives = 9/10 (90.00%), Query Frame = -1
Query:  448 VKENWRRPKG 477
            V E+WR+P+G
Sbjct:   25 VGESWRKPRG 34          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.463e-23
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:  162 RKIGADQRVX---DSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 473
            +++GA  R     D+RVRR+F G   MP+IG GS K T+   P+GFK+FV+ N +ELE+L+M NR Y A I H VS + RK IVERAA+L+I VT   ARLRS+E E
Sbjct:   27 KRVGASWRKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of DC887651 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.085e-18
Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = -2
Query:  180 QRVXDSRVRRKFKGCTLMPNIGXGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARL 455
            Q+  DS VRR+F+G    PNIG GS+KKT+   P G+K ++V N K+L++L++H ++Y AEIA  VS+RKR EIV +A +L + VTN   +L
Sbjct:   36 QKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
The following BLAST results are available for this feature:
BLAST of DC887651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL32_DROMD8.555e-3270.2160S ribosomal protein L32 OS=Drosophila madeirensi... [more]
RL32_DROGU8.555e-3270.2160S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF8.555e-3270.2160S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_APIME3.672e-3170.2160S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE2.228e-2762.89Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR1.563e-2558.2460S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32B_SCHPO2.758e-2457.8960S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32A_SCHPO3.589e-2457.8960S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32_DICDI1.463e-2353.2760S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_CANAL1.085e-1848.9160S ribosomal protein L32 OS=Candida albicans GN=R... [more]

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Properties
Property NameValue
Genbank descriptionDC887651 EIC Citrus sinensis cDNA clone EIC0679 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887651 ID=DC887651; Name=DC887651; organism=Citrus sinensis; type=EST; length=483bp
CATATATTTTTATGAATAAAAACTACTGTATTATCACTCATCCCAAAAAA
AATAAAAAATCACAAACGGTCGTATCTTTGTAAGTCAAAATTTTCAAAAT
TTTGATAAAGCGTACAAAACAAGACTCACTACTACTAAAAAGAACAGATT
GTTTAATCTCATTCATCTTCCTGGCTTCTCAATCTAGCAAGCTTGTTAGT
CACAACAATATCAAGTTGGGCAGCTCGCTCCACAATCTCTTTCCTCTTCC
TCGTGGAAACATCATGGGCAATTTCAGCACAGTAGGTCCTGTTGTGCATC
ATCAACAATTCAAGCTCTTTCGTATTGTGCACCACAAATTTCTTGAAACC
ATTTGGAAGATAGTGGCGTGTCTTCTTGTCCGAACCANAACCAATGTTGG
GCATTAGAGTGCATCCCTTGAACTTTCTTCGCACCCGGGAATCAANTACC
CTTTGGTCTGCGCCAATTTTCCTTGACGGAGAT
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