DC887604

Overview
NameDC887604
Unique NameDC887604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497H_ARATH (UPF0497 membrane protein At3g14380 OS=Arabidopsis thaliana GN=At3g14380 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.609e-40
Identity = 81/162 (50.00%), Postives = 113/162 (69.75%), Query Frame = -2
Query:  128 NAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAI-IAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAP 610
            N   ++AE + R              +KNS +++FGS+SYS++GAF YLV ANG+CA YSLLSA+ I A+P P +  Q  T F LDQ++TY++LAAGAVS E +YL   G++ ITWS+ C S+G FCH A+ SV+ TFV    Y++LSLISSY+LF++++AP
Sbjct:   17 NRTEKSAEAVLRVASMALSITGLVIMIKNSISNEFGSVSYSNIGAFMYLVSANGVCAAYSLLSALAILALPCPISKVQVRTLFLLDQVVTYVVLAAGAVSAETVYLAYYGNIPITWSSACDSYGSFCHNALISVVFTFVVSLLYMLLSLISSYRLFTRFEAP 178          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4972_PICSI (UPF0497 membrane protein 2 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.706e-37
Identity = 72/135 (53.33%), Postives = 102/135 (75.56%), Query Frame = -2
Query:  125 KNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPI 529
            K+ ++  +  L YS++ AFR L +ANGICAGYSL+SA  + +P    +S++W  F LDQ +TYL+LA GAV+T+VLY+  KGD   TW  +CGS+G FC++A ASVII+F A+ C+++LSL+S+Y+LFSKYD PI
Sbjct:   48 KSEQSDQYMQLDYSNVDAFRCLAYANGICAGYSLISAFDSMVPVSHHISRSWILFLLDQGITYLMLAGGAVATQVLYVAYKGDEKATWEQICGSYGRFCNRAGASVIISFFALVCFLLLSLLSAYRLFSKYDPPI 182          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4974_PICSI (UPF0497 membrane protein 4 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 69/145 (47.59%), Postives = 102/145 (70.34%), Query Frame = -2
Query:  101 KNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMS--QAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSGKNIE 529
            KN +++ +G+L YSD+G F+YLV+ANGICA YS+LS + + +      S  +AW  F LDQ LTYLIL AG    E++ L  +G+  ++WS VC S+G FC+ A ASV+IT   + C++VLSL+S+++LFSKY+API  +G + +
Sbjct:   37 KNKQSNQYGALHYSDVGGFKYLVYANGICAIYSILSLLGSVLSTGIDYSWTRAWIMFILDQALTYLILTAGVCGVEIMDLAYQGNEQVSWSRVCVSYGKFCNDARASVLITMAVLVCFMVLSLLSAHRLFSKYEAPIVNNGHHTD 181          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497G_VITVI (UPF0497 membrane protein 16 OS=Vitis vinifera GN=GSVIVT00027310001 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.179e-24
Identity = 53/140 (37.86%), Postives = 94/140 (67.14%), Query Frame = -2
Query:  101 ETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSGKNIE 520
            + S +G L +S+L   +Y+V  +GI AGY+L+ A++A+  R   +++AW FF  DQ++ YL++ +GA   E+LYL  KGD  ++WS  C S+G FC +   ++ +  +A+ C++VL++IS+Y++FS ++ P+  S K +E
Sbjct:   46 DNSIYGKLEFSNLTGLKYMVCISGISAGYALV-AVVASWVR-CLVNKAWLFFVSDQIMAYLMVTSGAAVLEILYLAYKGDRGVSWSEACSSYGRFCSRVNLALALHALALCCFLVLAVISAYRVFSMFEPPV--SSKEVE 181          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497B_ORYSJ (UPF0497 membrane protein Os02g02199000 OS=Oryza sativa subsp. japonica GN=Os02g0219900 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.955e-23
Identity = 51/133 (38.35%), Postives = 80/133 (60.15%), Query Frame = -2
Query:  110 FGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSGK 508
            +G + +SDL  FRYLV  N I A YS+ S ++++    +     W  F LDQ   YL+L + + + EV+YL R+GD  ++W  VC  FG FC  A  SV +   A+ C++ LSLIS++++F+K++ P   + K
Sbjct:   57 YGEVRFSDLSGFRYLVWINAITAAYSVASILLSSCRFITRFD--WLIFLLDQASAYLLLTSASAAAEVVYLAREGDREVSWGEVCSYFGRFCGAATVSVALNAAALLCFMALSLISAFRVFTKFNPPSQSNSK 187          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497D_MAIZE (UPF0497 membrane protein 13 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = -2
Query:  143 GNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSD-FGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFS 613
            G A L+  E   R                N++  D +G + +SDL  F YLV  N + A Y++ S + ++  RP      W    +DQ   YL++ + + + E+L L R GD  ++W   C  FG FC KA  S+ +   A+AC+  LSL+S++++FS
Sbjct:    2 GAAGLKVPEMALRLCVVPLSLASLWEMASNAQADDTYGEVKFSDLSGFSYLVGVNAVTAAYAVASVLASSFKRPLAARYDWVVLVMDQASAYLLVTSASAAAELLQLARHGDRGVSWGEACSYFGRFCGKATVSLALHAAALACFAALSLVSAFRVFS 159          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497A_RICCO (UPF0497 membrane protein 10 OS=Ricinus communis GN=RCOM_1302390 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 43/135 (31.85%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  122 NSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIA 526
            + + S +G+L YS++   +Y+V  + ICA Y+ ++A+   +     +++ W FF  DQ++ YL++ + A + E+LY+   GD  +TWS  C S+G FC+    ++I+  + +  ++VL++IS+Y+ FS Y  P++
Sbjct:   31 HQDNSSYGNLKYSNIMGLKYMVCISAICASYAFVAAVSIWIK--CLVNKVWLFFVSDQIIAYLMVTSVAAAMEILYIAYNGDQKVTWSEACTSYGKFCNGMKTALILHALTLCFFIVLAVISAYRAFSMYQPPVS 163          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4979_SOYBN (UPF0497 membrane protein 9 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.697e-20
Identity = 46/135 (34.07%), Postives = 79/135 (58.52%), Query Frame = -2
Query:  116 ETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACS 520
            + S +G L Y++L A +Y+V  + +CA Y+LL+A  + +     +S+AW FF  DQ++ YL + + A   E+ YL   G    +WS  C S+G FC K   ++I+  +   C+ V+++IS+++ FS +D P   S
Sbjct:   47 DNSSYGMLKYNNLSALKYMVLVSALCACYALLAAACSLVR--CFVSKAWIFFVSDQIVAYLAITSVAAVMEMYYLAYNGAKEDSWSEACSSYGSFCSKVKLALILHTITFCCFFVIAVISAFRAFSVFDPPFVNS 179          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4977_SORBI (UPF0497 membrane protein Sb04g007720 OS=Sorghum bicolor GN=Sb04g007720 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 44/129 (34.11%), Postives = 78/129 (60.47%), Query Frame = -2
Query:  143 NSETSD-FGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFS 526
            N++  D +G + +SDL  F YLV  N + A Y+L+S +++++   +     W    +DQ   YL++ + + + E+L L R+GD  ++W  VC  FG FC KA  S+ +   A+AC+V L+L+S++++ S
Sbjct:   31 NAQADDTYGEVKFSDLSGFSYLVGVNAVTAAYALVSILLSSLKPLARYD--WVILVMDQASAYLLVTSASAAAELLQLARRGDREVSWGEVCSYFGRFCGKATVSLALHAAALACFVALALVSAFRVLS 157          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U49C7_ARATH (UPF0497 membrane protein At5g54980 OS=Arabidopsis thaliana GN=At5g54980 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 45/128 (35.16%), Postives = 79/128 (61.72%), Query Frame = -2
Query:  128 DFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAP 511
            D+G+L Y+ +   +Y+V  + I A Y+LLS + + +     +S+AW FF  DQ+L Y++  + A +TE++YL  KGD  +TWS +C S+  +C K   ++ +    +  ++ LS+IS+Y+ FS +D P
Sbjct:   60 DYGNLEYNSIMGLKYMVGVSAISAIYALLSTVSSWVT--CLVSKAWLFFIPDQVLAYVMTTSVAGATEIVYLLNKGDKIVTWSEMCSSYPHYCSKLTIALGLHVFVLFFFLFLSVISAYRAFSPFDPP 185          
The following BLAST results are available for this feature:
BLAST of DC887604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
U497H_ARATH7.609e-4050.00UPF0497 membrane protein At3g14380 OS=Arabidopsis ... [more]
U4972_PICSI2.706e-3753.33UPF0497 membrane protein 2 OS=Picea sitchensis PE=... [more]
U4974_PICSI8.149e-3447.59UPF0497 membrane protein 4 OS=Picea sitchensis PE=... [more]
U497G_VITVI1.179e-2437.86UPF0497 membrane protein 16 OS=Vitis vinifera GN=G... [more]
U497B_ORYSJ4.955e-2338.35UPF0497 membrane protein Os02g02199000 OS=Oryza sa... [more]
U497D_MAIZE1.220e-2131.65UPF0497 membrane protein 13 OS=Zea mays PE=2 SV=1[more]
U497A_RICCO7.911e-2131.85UPF0497 membrane protein 10 OS=Ricinus communis GN... [more]
U4979_SOYBN6.697e-2034.07UPF0497 membrane protein 9 OS=Glycine max PE=2 SV=... [more]
U4977_SORBI1.142e-1934.11UPF0497 membrane protein Sb04g007720 OS=Sorghum bi... [more]
U49C7_ARATH9.670e-1935.16UPF0497 membrane protein At5g54980 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionDC887604 EIC Citrus sinensis cDNA clone EIC0619 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887604 ID=DC887604; Name=DC887604; organism=Citrus sinensis; type=EST; length=653bp
ATGCATTAACACAAACAAGCACTTGCATGGAGTAACTTGAGCAAACACAA
TATATCGCATCAAACTGAGTGAGCGATCATCAGCCATGGAAGGCGGCAAC
CTCAATATTCTTGCCCGAGCAGGCGATAGGCGCGTCGTATTTGCTGAAGA
GTTTATAAGAGGAGATGAGCGAAAGAACAACATAGCAAGCCACTGCAACA
AATGTAATTATCACTGATGCTATAGCTTTATGACAGAATCCACCAAATGA
ACCACAGACTGCGCTCCAAGTGATGGCTAAATCTCCCTTGCGTTCCAGGT
ACAGCACCTCCGTCGACACGGCTCCAGCCGCCAGAATCAAGTAAGTGAGC
AACTGATCAAGGAAAAAGAAAGTCCAGGCTTGAGACATGGTGGAGGGACG
AGGCATGGCTGCAATAATTGCTGAAAGAAGCGAATAGCCTGCACAAATGC
CATTGGCATGCACTAAATACCTGAAGGCTCCAAGGTCGGAGTAAGAAAGA
GAGCCAAAGTCACTAGTCTCAGAGTTCTTAAGCATGAGCACAAGTGCAGC
AACACAGAGAGCCATTGGCACCAAACGTGCAATGGGCTCAGCTGTGCGCA
AGGCAGCGTTGCCATCCTCATTGATCTCTTGATGAGCCCTCGATCCCATC
ATT
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