DC887604

Overview
NameDC887604
Unique NameDC887604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497D_RICCO (UPF0497 membrane protein 13 OS=Ricinus communis GN=RCOM_1446020 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 41/118 (34.75%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  149 YSDLGAFRYLVHANGICAGYSLLSAI-IAAMPRPST--MSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 493
            YS   AFR+LV AN +  G+S+LS I +  M R S   + + +  F  D ++  ++++  + +T + Y+ R G+  ITW+AVC   G FC++A+ S+++ ++A+ CYV L+ ++++KL
Sbjct:   71 YSYSSAFRFLVGANAVVCGFSVLSLIFVCLMSRRSEAILEKNYYLFLHDMVMMVMMVSGCSAATAIGYVGRYGEKEITWTAVCDFVGKFCNQALVSIVLAYLALFCYVALTTLAAHKL 188          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4979_POPTR (UPF0497 membrane protein 9 OS=Populus trichocarpa GN=POPTRDRAFT_576556 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = -2
Query:  149 SYSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 496
            SY DL  F++ V A  I AGY +LS    I A+ RP           LD +   L  AAGA +  ++YL   G+ +  W A+C  FG FC K   +V+ +F+ V  +V L ++S++ L
Sbjct:   79 SYDDLPTFQFFVIAMAIVAGYLVLSLPFSIVAIVRPHAAGPRLLLIILDTVALTLNTAAGAAAAAIVYLAHNGNSSTNWLAICQQFGDFCQKNSGAVVASFITVVIFVFLLVLSAFAL 196          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4977_VITVI (UPF0497 membrane protein 7 OS=Vitis vinifera GN=GSVIVT00037922001 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 38/118 (32.20%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  149 SLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 502
            ++ YS L AF++LV A+ +  G+S+LS I  ++      +  +  +F D +L  L ++A A +T V Y+ R G     W AVCG+   FC KA+AS++++ +   C  +L+++++  L
Sbjct:   65 TVRYSYLSAFKFLVGADAVVCGFSMLSLIFVSIFNKGKSNHYFFLYFHDLILMVLSMSACAAATAVGYVGRYGQDKAAWMAVCGNVKMFCDKALASILLSLIGFICLFLLTIMAARNL 182          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4975_PICSI (UPF0497 membrane protein 5 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 48/136 (35.29%), Postives = 66/136 (48.53%), Query Frame = -2
Query:  101 YSDLGAFRYLVHANGICAGYSLLSAIIAAMP----RPSTMSQ-AWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSGKNIE 493
            YSD+ A  +LV  NGI A YSLL  +   +      P T    AW  F LDQ + Y  LAA A + E  YL  +G     W  VC  +  FCH+    ++ TF+       +S +S+Y LF  Y +     GK+I+
Sbjct:  107 YSDMKALVFLVVMNGIVASYSLLQGLRCVLSIYTQSPLTSKPLAWLIFALDQTMAYFSLAAAAAAAESAYLAERGQTEFQWMKVCIFYEKFCHQIGEGLVSTFLVSLSMATVSGMSAYHLFRLYGS----KGKSIQ 238          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4978_POPTR (UPF0497 membrane protein 8 OS=Populus trichocarpa GN=POPTRDRAFT_763057 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = -2
Query:  149 SYSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 496
            SY DL  F++ V A  I  GY +LS    I A+ RP  +        LD +   L  AAGA +  ++YL   G+    W A+C  +G FC K   +V+ +F+ V  +V L ++S++ L
Sbjct:   79 SYDDLPTFQFFVIAIAIVGGYLVLSLPFSIVAIVRPHAVGPRLLLIILDAVALTLNTAAGAAAAAIVYLAHNGNSNTNWLAICQQYGDFCQKVSGAVVASFITVVIFVFLIVLSAFAL 196          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497S_ARATH (UPF0497 membrane protein At4g16442 OS=Arabidopsis thaliana GN=At4g16442 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = -2
Query:  131 YSDLGAFRYLVHANGICAGYSLLSAI---IAAMPRPSTMSQ--AWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDA 493
            Y+D+ A  +LV ANGI A YSLL ++   +  M      S+  AW FF  DQ + YL +AA A + E   + R+G+  + W  VC  +G FC++    V    +A    V +S IS++ LF  Y A
Sbjct:   48 YTDMKAVVFLVVANGIAAVYSLLQSVRCVVGTMKGKVLFSKPLAWAFFSGDQAMAYLNVAAIAATAESGVIAREGEEDLQWMRVCTMYGKFCNQMAIGVSSALLASIAMVFVSCISAFSLFRLYGA 173          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497E_RICCO (UPF0497 membrane protein 14 OS=Ricinus communis GN=RCOM_0864260 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = -2
Query:  131 YSDLGAFRYLVHANGICAGYSLLSAI--IAAMPRPSTMSQ---AWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDA 493
            ++D+ A  +LV ANGI A YSLL  +  +  M R S +     AW  F  DQ++ YL +AA A + +     + G   + W  +C  +G FC++    +    +     VVLS IS++ LF  Y A
Sbjct:   68 FTDMKALVFLVIANGIAAAYSLLQGVRCVVGMVRGSALFSKPLAWAIFSGDQMMAYLTVAAVAAAAQSAVFAKLGQPELQWMKICNMYGKFCNQVGEGIASALLVSVSMVVLSCISAFSLFRLYGA 193          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4971_VITVI (UPF0497 membrane protein 1 OS=Vitis vinifera GN=GSVIVT00037312001 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 37/118 (31.36%), Postives = 60/118 (50.85%), Query Frame = -2
Query:  149 SYSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 496
            SY DL AF + V AN I +GY  LS    I  + RP  M         D ++  L +AA A +  ++YL   G+    W A+C  F  FC     +V+ +F+A   ++++ ++S++ L
Sbjct:   81 SYDDLPAFSFFVIANAIASGYLFLSLPFSIVCIVRPHAMGARLLLVICDTVMVALTIAAAAAAAAIVYLAHNGNSNANWVAICQQFDDFCQSVSGAVVASFIAAVLFMLMIVLSAFSL 198          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497I_SORBI (UPF0497 membrane protein Sb08g016550 OS=Sorghum bicolor GN=Sb08g016550 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 50/177 (28.25%), Postives = 79/177 (44.63%), Query Frame = -2
Query:  137 EDGNAALRTAEPIARXXXXXXXXXXXXXXLKNSETSDFGSL----SYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQ------------AWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKY 619
            +D    ++ AE   R                +++T  F SL    SY+D+ A  +LV A  + AGYSLL  + A       MS             +W  F  DQ L Y++LAA A + +   + ++G   + W  +C  +G FC +A A +    VA    V+L+ +S++ LF  Y
Sbjct:   11 QDAERKVKVAEVALRALLCGLGALAAALVATDTQTRTFFSLQKKASYTDMKAMVFLVDAAAVAAGYSLLQ-LAARCCGGGAMSSGRGDGGGRGRALSWCVFSCDQALAYVLLAAVAAALQASVVAKRGQPELQWMGICALYGAFCRQAGAGLATAVVAGLAAVLLAFLSAFNLFRLY 186          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497G_SORBI (UPF0497 membrane protein Sb07g000300 OS=Sorghum bicolor GN=Sb07g000300 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = -2
Query:  158 YSDLGAFRYLVHANGICAGYSLLS----AIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISS 493
            + D  AF + + AN + AGY +LS     ++   P  +T          D L+  L+ AAGA +  ++Y+   G+    W  +C  F GFC +   SV+ TF+AV  ++VL L+++
Sbjct:  113 FDDFPAFTFFLVANAVAAGYLVLSLPFSVVVILRPNKATGGVRLLLLLCDVLIMALLTAAGAAAAAIVYVAHSGNRRANWVPICMQFHGFCQRTSGSVVATFLAVLVFIVLILMAA 228          
The following BLAST results are available for this feature:
BLAST of DC887604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
U497D_RICCO1.001e-1534.75UPF0497 membrane protein 13 OS=Ricinus communis GN... [more]
U4979_POPTR5.491e-1435.59UPF0497 membrane protein 9 OS=Populus trichocarpa ... [more]
U4977_VITVI9.367e-1432.20UPF0497 membrane protein 7 OS=Vitis vinifera GN=GS... [more]
U4975_PICSI9.367e-1435.29UPF0497 membrane protein 5 OS=Picea sitchensis PE=... [more]
U4978_POPTR3.559e-1333.90UPF0497 membrane protein 8 OS=Populus trichocarpa ... [more]
U497S_ARATH4.649e-1336.51UPF0497 membrane protein At4g16442 OS=Arabidopsis ... [more]
U497E_RICCO4.649e-1333.33UPF0497 membrane protein 14 OS=Ricinus communis GN... [more]
U4971_VITVI6.071e-1331.36UPF0497 membrane protein 1 OS=Vitis vinifera GN=GS... [more]
U497I_SORBI1.353e-1228.25UPF0497 membrane protein Sb08g016550 OS=Sorghum bi... [more]
U497G_SORBI1.766e-1231.03UPF0497 membrane protein Sb07g000300 OS=Sorghum bi... [more]

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Properties
Property NameValue
Genbank descriptionDC887604 EIC Citrus sinensis cDNA clone EIC0619 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887604 ID=DC887604; Name=DC887604; organism=Citrus sinensis; type=EST; length=653bp
ATGCATTAACACAAACAAGCACTTGCATGGAGTAACTTGAGCAAACACAA
TATATCGCATCAAACTGAGTGAGCGATCATCAGCCATGGAAGGCGGCAAC
CTCAATATTCTTGCCCGAGCAGGCGATAGGCGCGTCGTATTTGCTGAAGA
GTTTATAAGAGGAGATGAGCGAAAGAACAACATAGCAAGCCACTGCAACA
AATGTAATTATCACTGATGCTATAGCTTTATGACAGAATCCACCAAATGA
ACCACAGACTGCGCTCCAAGTGATGGCTAAATCTCCCTTGCGTTCCAGGT
ACAGCACCTCCGTCGACACGGCTCCAGCCGCCAGAATCAAGTAAGTGAGC
AACTGATCAAGGAAAAAGAAAGTCCAGGCTTGAGACATGGTGGAGGGACG
AGGCATGGCTGCAATAATTGCTGAAAGAAGCGAATAGCCTGCACAAATGC
CATTGGCATGCACTAAATACCTGAAGGCTCCAAGGTCGGAGTAAGAAAGA
GAGCCAAAGTCACTAGTCTCAGAGTTCTTAAGCATGAGCACAAGTGCAGC
AACACAGAGAGCCATTGGCACCAAACGTGCAATGGGCTCAGCTGTGCGCA
AGGCAGCGTTGCCATCCTCATTGATCTCTTGATGAGCCCTCGATCCCATC
ATT
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