DC887604

Overview
NameDC887604
Unique NameDC887604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4975_RICCO (UPF0497 membrane protein 5 OS=Ricinus communis GN=RCOM_1282030 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 35/117 (29.91%), Postives = 60/117 (51.28%), Query Frame = -2
Query:  149 YSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 493
            Y+DL  F + V ANGI +GY +LS    I  + RP  +         D ++  L +AA + +  ++YL   G+    W+A+C  F  FC +   +V+ +F+  A    L ++S++ L
Sbjct:   96 YNDLPTFMFFVFANGIASGYLILSLPFSIVCIVRPLAIVPRLLLIIFDTVVMALTIAAASAAAAIVYLAHNGNSNANWNAICQQFNDFCQQTSTAVVASFITAAMLTFLIVLSAFAL 212          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497C_VITVI (UPF0497 membrane protein 12 OS=Vitis vinifera GN=GSVIVT00013502001 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = -2
Query:  113 YSDLGAFRYLVHANGICAGYSLLSAI--IAAMPRPSTMSQ---AWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDAPIACSG 493
            ++D+ A  +LV ANGI A YSL+  +  + +M R S +     AW  F  DQ++ YL LAA A + +       G   + W  +C  +G FC++    ++         V+LS IS++ LF  Y      SG
Sbjct:   68 FTDMKALVFLVIANGIAAAYSLIQGLRCVVSMVRGSVLFSKPLAWAIFSGDQVIAYLTLAAVAAAAQSSVFGEFGQPELQWMKICNMYGKFCNQVGEGIVSAVGVSLSMVILSGISAFSLFRLYGGNKGTSG 199          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4978_RICCO (UPF0497 membrane protein 8 OS=Ricinus communis GN=RCOM_1259260 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = -2
Query:  149 YSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 493
            Y D   F++ V A  + AGY +LS    I ++ RP         F LD +   L  AAGA + +++YL   G+    W A+C  FG FC +   SV+ +F +V   +VL ++S   L
Sbjct:   81 YDDFPTFQFFVIAMAMVAGYLVLSLPFSIVSICRPHAAGPRILLFILDTVALTLNAAAGAAAADIVYLAHNGNQTTNWLAICLQFGDFCREVSGSVVASFASVVILMVLVVMSGLAL 197          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4979_MAIZE (UPF0497 membrane protein 9 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = -2
Query:  131 NSETSDFGSL----SYSDLGAFRYLVHANGICAGYSLLSA--------IIAAMPRP-STMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYDA 526
            +++T  F SL    +Y+D+ A   LV A    AGYSLL A        ++    RP + +  AW  F  DQ L Y +LAA   + +   + ++G   + W A+C  +G FC +A A V     A     +L+ +S++ LF  Y A
Sbjct:   40 DTQTRTFFSLQKKATYTDMKAMVLLVAAAAAAAGYSLLQAARCCCCVALLRTSIRPRARLLLAWCVFACDQALAYALLAAVVAALQASVVAKQGLPQLQWMAICALYGAFCRQAGAGVACAVAAAVDAALLAFLSAFNLFRLYGA 184          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4977_RICCO (UPF0497 membrane protein 7 OS=Ricinus communis GN=RCOM_1259250 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 38/117 (32.48%), Postives = 59/117 (50.43%), Query Frame = -2
Query:  149 YSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 493
            Y D   F++ V A G   GY +LS    + A+ RP  +        LD +   L  AA A +  ++YL   G+ +  W AVC  FG FC K    V+ +FV+V  +++L ++S+  L
Sbjct:   81 YDDFPTFQFFVIAMGFVGGYLVLSLPFSVVAIIRPHAVGIRLLLLILDTVALTLNTAAAAAAAAIVYLAHNGNQSANWLAVCQQFGDFCQKVSGGVVASFVSVLVFLLLVVMSAVAL 197          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U497E_SORBI (UPF0497 membrane protein Sb06g018970 OS=Sorghum bicolor GN=Sb06g018970 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 35/121 (28.93%), Postives = 62/121 (51.24%), Query Frame = -2
Query:  137 YSDLGAFRYLVHANGICAGYSLLSAIIAAMP--RPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKY 493
            YSDL +F + V AN +   Y +LS  ++ +   RP          F D ++  L+ A  + +  ++YL  KG++   W A+C  F  FC +   S+I +F A+   +VL  +S++ L  ++
Sbjct:   72 YSDLPSFTFFVAANAVVCTYLVLSIPLSIVHIIRPRARYSRLILVFFDAVMLALLTAGASAAAAIVYLAHKGNVRANWFAICQQFDSFCERISGSLIGSFAAMVLLIVLIFLSAFALARRH 192          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4975_SOYBN (UPF0497 membrane protein 5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = -2
Query:  158 SYSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISS 496
            SY     F++ V    +  GY +LS    I A+ RP  +        LD     L  A GA +  ++YL   GD    W A+C  FG FC +  A+V+ +FVAV   V+L ++S+
Sbjct:   75 SYDSFTTFQFFVITMSLVGGYLVLSLPFSIVAIVRPHAVGPRLFLIILDTAFLTLATAGGASAAAIVYLAHNGDQDTNWLAICNQFGDFCAQTSAAVVSSFVAVVVLVLLIIMSA 189          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4975_POPTR (UPF0497 membrane protein 5 OS=Populus trichocarpa GN=POPTRDRAFT_575900 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 37/124 (29.84%), Postives = 62/124 (50.00%), Query Frame = -2
Query:  137 YSDLGAFRYLVHANGICAGYSLLSAI--IAAMPRPSTMSQ---AWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKY 493
            ++D+ A  +LV ANGI A YS +  +  +  M + S +     AW  F  DQ++ YL ++A A + +     + G   + W  +C  +G FC++    +    +     VVLS IS++ LF  Y
Sbjct:   68 FTDMKALVFLVAANGIAAAYSFVQGVRCVVGMVKGSVLFSKPLAWVIFSGDQMMAYLTMSAVAAAAQSSVFAKLGQPDLQWMKICTMYGKFCNQVGEGIASALLVSVSMVVLSCISAFSLFRLY 191          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4974_POPTR (UPF0497 membrane protein 4 OS=Populus trichocarpa GN=POPTRDRAFT_907513 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = -2
Query:  149 SYSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 496
            SY DL  F++ V A  I +GY +LS    I A+ RP           LD +   L  AA A +  ++ L + G+ +  W  +C  FG FC KA  +V+ +F+A    + L +IS+  L
Sbjct:   77 SYDDLPTFQFFVIAMAIVSGYLVLSLPFSIVAIIRPHATGPRLLLIILDTVALTLNTAAAAAAVAIVDLAQNGNSSANWLGICQQFGDFCQKASGAVVASFIAAGVLLFLIVISALAL 194          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4972_RICCO (UPF0497 membrane protein 2 OS=Ricinus communis GN=RCOM_0299440 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 37/117 (31.62%), Postives = 60/117 (51.28%), Query Frame = -2
Query:  149 YSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 493
            Y DL  F + V AN + +GY LLS    I  + R +  ++       D  +  L+ A  + +  ++YL  KG+    W A+C  F  FC +   S+I +FV VA +++L L+S+  L
Sbjct:   66 YDDLPTFTFFVVANIVVSGYLLLSLPLSIVNIVRSTAKNRRIILIIFDTAMLALLTAGASAAAAIVYLAHKGNTRANWFAICQQFNSFCERISGSLIGSFVGVAVFILLILMSASAL 182          
The following BLAST results are available for this feature:
BLAST of DC887604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
U4975_RICCO5.140e-1229.91UPF0497 membrane protein 5 OS=Ricinus communis GN=... [more]
U497C_VITVI8.767e-1231.82UPF0497 membrane protein 12 OS=Vitis vinifera GN=G... [more]
U4978_RICCO8.767e-1233.33UPF0497 membrane protein 8 OS=Ricinus communis GN=... [more]
U4979_MAIZE1.145e-1131.72UPF0497 membrane protein 9 OS=Zea mays PE=2 SV=1[more]
U4977_RICCO1.495e-1132.48UPF0497 membrane protein 7 OS=Ricinus communis GN=... [more]
U497E_SORBI2.551e-1128.93UPF0497 membrane protein Sb06g018970 OS=Sorghum bi... [more]
U4975_SOYBN3.331e-1133.04UPF0497 membrane protein 5 OS=Glycine max PE=2 SV=... [more]
U4975_POPTR5.682e-1129.84UPF0497 membrane protein 5 OS=Populus trichocarpa ... [more]
U4974_POPTR5.682e-1133.05UPF0497 membrane protein 4 OS=Populus trichocarpa ... [more]
U4972_RICCO5.682e-1131.62UPF0497 membrane protein 2 OS=Ricinus communis GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887604 EIC Citrus sinensis cDNA clone EIC0619 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887604 ID=DC887604; Name=DC887604; organism=Citrus sinensis; type=EST; length=653bp
ATGCATTAACACAAACAAGCACTTGCATGGAGTAACTTGAGCAAACACAA
TATATCGCATCAAACTGAGTGAGCGATCATCAGCCATGGAAGGCGGCAAC
CTCAATATTCTTGCCCGAGCAGGCGATAGGCGCGTCGTATTTGCTGAAGA
GTTTATAAGAGGAGATGAGCGAAAGAACAACATAGCAAGCCACTGCAACA
AATGTAATTATCACTGATGCTATAGCTTTATGACAGAATCCACCAAATGA
ACCACAGACTGCGCTCCAAGTGATGGCTAAATCTCCCTTGCGTTCCAGGT
ACAGCACCTCCGTCGACACGGCTCCAGCCGCCAGAATCAAGTAAGTGAGC
AACTGATCAAGGAAAAAGAAAGTCCAGGCTTGAGACATGGTGGAGGGACG
AGGCATGGCTGCAATAATTGCTGAAAGAAGCGAATAGCCTGCACAAATGC
CATTGGCATGCACTAAATACCTGAAGGCTCCAAGGTCGGAGTAAGAAAGA
GAGCCAAAGTCACTAGTCTCAGAGTTCTTAAGCATGAGCACAAGTGCAGC
AACACAGAGAGCCATTGGCACCAAACGTGCAATGGGCTCAGCTGTGCGCA
AGGCAGCGTTGCCATCCTCATTGATCTCTTGATGAGCCCTCGATCCCATC
ATT
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